Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
BernoulliTrialCellCycleModel.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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5
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9
10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
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19 * Neither the name of the University of Oxford nor the names of its
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21 software without specific prior written permission.
22
23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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32OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33
34*/
35
36#include "BernoulliTrialCellCycleModel.hpp"
37#include "DifferentiatedCellProliferativeType.hpp"
38
41 mDivisionProbability(0.1),
42 mMinimumDivisionAge(1.0)
43{
44}
45
47 : AbstractCellCycleModel(rModel),
48 mDivisionProbability(rModel.mDivisionProbability),
49 mMinimumDivisionAge(rModel.mMinimumDivisionAge)
50{
51 /*
52 * Initialize only those member variables defined in this class.
53 *
54 * The member variables mBirthTime, mReadyToDivide and mDimension
55 * are initialized in the AbstractCellCycleModel constructor.
56 */
57}
58
60{
61 assert(mpCell != nullptr);
62
63 if (!mReadyToDivide)
64 {
66 {
68 if (!(mpCell->GetCellProliferativeType()->IsType<DifferentiatedCellProliferativeType>()))
69 {
71 if (p_gen->ranf() < mDivisionProbability*dt)
72 {
73 mReadyToDivide = true;
74 }
75 }
76 }
77 }
78 return mReadyToDivide;
79}
80
85
87{
88 mDivisionProbability = divisionProbability;
89}
90
95
97{
98 mMinimumDivisionAge = minimumDivisionAge;
99}
100
105
110
115
117{
118 *rParamsFile << "\t\t\t<DivisionProbability>" << mDivisionProbability << "</DivisionProbability>\n";
119 *rParamsFile << "\t\t\t<MinimumDivisionAge>" << mMinimumDivisionAge << "</MinimumDivisionAge>\n";
120
121 // Call method on direct parent class
123}
124
125// Serialization for Boost >= 1.36
#define CHASTE_CLASS_EXPORT(T)
virtual void OutputCellCycleModelParameters(out_stream &rParamsFile)=0
void SetDivisionProbability(double divisionProbability)
AbstractCellCycleModel * CreateCellCycleModel()
void SetMinimumDivisionAge(double minimumDivisionAge)
virtual void OutputCellCycleModelParameters(out_stream &rParamsFile)
static RandomNumberGenerator * Instance()
double GetTimeStep() const
static SimulationTime * Instance()