Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
ExclusionCaBasedDivisionRule.cpp
1/*
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34*/
35
36#include "ExclusionCaBasedDivisionRule.hpp"
37#include "RandomNumberGenerator.hpp"
38
39template<unsigned SPACE_DIM>
41{
42 bool is_room = false;
43
44 // Get node index corresponding to this cell
45 unsigned node_index = rCellPopulation.GetLocationIndexUsingCell(pParentCell);
46
47 // Get the set of neighbouring node indices
48 std::set<unsigned> neighbouring_node_indices = static_cast<PottsMesh<SPACE_DIM>*>(&(rCellPopulation.rGetMesh()))->GetMooreNeighbouringNodeIndices(node_index);
49
50 // Iterate through the neighbours to see if there are any available sites
51 for (std::set<unsigned>::iterator neighbour_iter = neighbouring_node_indices.begin();
52 neighbour_iter != neighbouring_node_indices.end();
53 ++neighbour_iter)
54 {
55 if (rCellPopulation.IsSiteAvailable(*neighbour_iter, pParentCell))
56 {
57 is_room = true;
58 break;
59 }
60 }
61
62 return is_room;
63}
64
65template<unsigned SPACE_DIM>
67{
68 if (!IsRoomToDivide(pParentCell,rCellPopulation))
69 {
70 EXCEPTION("Trying to divide when there is no room to divide, check your division rule");
71 }
72
73 // Get node index corresponding to the parent cell
74 unsigned parent_node_index = rCellPopulation.GetLocationIndexUsingCell(pParentCell);
75
76 PottsMesh<SPACE_DIM>* static_cast_mesh = static_cast<PottsMesh<SPACE_DIM>*>(&(rCellPopulation.rGetMesh()));
77
78 // Get the set of neighbouring node indices
79 std::set<unsigned> neighbouring_node_indices = static_cast_mesh->GetMooreNeighbouringNodeIndices(parent_node_index);
80 unsigned num_neighbours = neighbouring_node_indices.size();
81
82 // Each node must have at least one neighbour
83 assert(!neighbouring_node_indices.empty());
84
85 std::vector<double> neighbouring_node_propensities;
86 std::vector<unsigned> neighbouring_node_indices_vector;
87
88 double total_propensity = 0.0;
89
90 // Select neighbour at random
91 for (std::set<unsigned>::iterator neighbour_iter = neighbouring_node_indices.begin();
92 neighbour_iter != neighbouring_node_indices.end();
93 ++neighbour_iter)
94 {
95 neighbouring_node_indices_vector.push_back(*neighbour_iter);
96
97 double propensity_dividing_into_neighbour = rCellPopulation.EvaluateDivisionPropensity(parent_node_index,*neighbour_iter,pParentCell);
98
99 if (!(rCellPopulation.IsSiteAvailable(*neighbour_iter, pParentCell)))
100 {
101 propensity_dividing_into_neighbour = 0.0;
102 }
103
104 neighbouring_node_propensities.push_back(propensity_dividing_into_neighbour);
105 total_propensity += propensity_dividing_into_neighbour;
106 }
107 assert(total_propensity > 0); // If this trips the cell can't divide, so we need to include this in the IsSiteAvailable() method
108
109 for (unsigned i=0; i<num_neighbours; i++)
110 {
111 neighbouring_node_propensities[i] /= total_propensity;
112 }
113
114 // Sample random number to specify which move to make
116 double random_number = p_gen->ranf();
117
118 double total_probability = 0.0;
119 unsigned daughter_node_index = UNSIGNED_UNSET;
120
121 unsigned counter;
122 for (counter=0; counter < num_neighbours; counter++)
123 {
124 total_probability += neighbouring_node_propensities[counter];
125 if (total_probability >= random_number)
126 {
127 // Divide the parent cell to this neighbour location
128 daughter_node_index = neighbouring_node_indices_vector[counter];
129 break;
130 }
131 }
132 // This loop should always break as sum(neighbouring_node_propensities) = 1
133
134 assert(daughter_node_index != UNSIGNED_UNSET);
135 assert(daughter_node_index < static_cast_mesh->GetNumNodes());
136
137 return daughter_node_index;
138}
139
140// Explicit instantiation
144
145// Serialization for Boost >= 1.36
#define EXCEPTION(message)
const unsigned UNSIGNED_UNSET
Definition Exception.hpp:53
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
unsigned GetLocationIndexUsingCell(CellPtr pCell)
virtual double EvaluateDivisionPropensity(unsigned currentNodeIndex, unsigned targetNodeIndex, CellPtr pCell)
PottsMesh< DIM > & rGetMesh()
virtual bool IsSiteAvailable(unsigned index, CellPtr pCell)
virtual bool IsRoomToDivide(CellPtr pParentCell, CaBasedCellPopulation< SPACE_DIM > &rCellPopulation)
virtual unsigned CalculateDaughterNodeIndex(CellPtr pNewCell, CellPtr pParentCell, CaBasedCellPopulation< SPACE_DIM > &rCellPopulation)
std::set< unsigned > GetMooreNeighbouringNodeIndices(unsigned nodeIndex)
static RandomNumberGenerator * Instance()