MonodomainSolver.hpp

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*/
 
#ifndef MONODOMAINSOLVER_HPP_
#define MONODOMAINSOLVER_HPP_
 
#include "AbstractDynamicLinearPdeSolver.hpp"
#include "MassMatrixAssembler.hpp"
#include "NaturalNeumannSurfaceTermAssembler.hpp"
#include "MonodomainCorrectionTermAssembler.hpp"
#include "MonodomainTissue.hpp"
#include "MonodomainAssembler.hpp"
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class MonodomainSolver
  : public AbstractDynamicLinearPdeSolver<ELEMENT_DIM,SPACE_DIM,1>
{
private:
 
    MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* mpMonodomainTissue;
 
    BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,1>* mpBoundaryConditions;
 
    MonodomainAssembler<ELEMENT_DIM,SPACE_DIM>* mpMonodomainAssembler;
 
    NaturalNeumannSurfaceTermAssembler<ELEMENT_DIM,SPACE_DIM,1>* mpNeumannSurfaceTermsAssembler;
 
    MonodomainCorrectionTermAssembler<ELEMENT_DIM,SPACE_DIM>* mpMonodomainCorrectionTermAssembler;
 
    Mat mMassMatrix;
 
    Vec mVecForConstructingRhs;
 
 
    void SetupLinearSystem(Vec currentSolution, bool computeMatrix);
 
public:
    void PrepareForSetupLinearSystem(Vec currentSolution);
 
    virtual void InitialiseForSolve(Vec initialSolution);
 
    MonodomainSolver(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh,
                     MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* pTissue,
                     BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,1>* pBoundaryConditions);
 
    virtual ~MonodomainSolver();
};
 
#endif /*MONODOMAINSOLVER_HPP_*/