Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
VertexCryptBoundaryForce.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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34*/
35
36#include "VertexCryptBoundaryForce.hpp"
38
39template<unsigned DIM>
41 : AbstractForce<DIM>(),
42 mForceStrength(forceStrength)
43{
44 // We don't want the force to act in the wrong direction
45 assert(mForceStrength > 0.0);
46}
47
48template<unsigned DIM>
52
53template<unsigned DIM>
55{
56 // Helper variable that is a static cast of the cell population
57 VertexBasedCellPopulation<DIM>* p_cell_population = static_cast<VertexBasedCellPopulation<DIM>*>(&rCellPopulation);
58
59 // Throw an exception message if not using a VertexBasedCellPopulation
60 if (dynamic_cast<VertexBasedCellPopulation<DIM>*>(&rCellPopulation) == nullptr)
61 {
62 EXCEPTION("VertexCryptBoundaryForce is to be used with VertexBasedCellPopulations only");
63 }
64
65 // Iterate over nodes
66 for (typename AbstractMesh<DIM,DIM>::NodeIterator node_iter = p_cell_population->rGetMesh().GetNodeIteratorBegin();
67 node_iter != p_cell_population->rGetMesh().GetNodeIteratorEnd();
68 ++node_iter)
69 {
70 double y = node_iter->rGetLocation()[1]; // y-coordinate of node
71
72 // If the node lies below the line y=0, then add the boundary force contribution to the node forces
73 if (y < 0.0 && DIM > 1)
74 {
75 c_vector<double, DIM> boundary_force = zero_vector<double>(DIM);
76 boundary_force[1] = mForceStrength*SmallPow(y, 2);
77
78 node_iter->AddAppliedForceContribution(boundary_force);
79 }
80 }
81}
82
83template<unsigned DIM>
85{
86 return mForceStrength;
87}
88
89template<unsigned DIM>
91{
92 *rParamsFile << "\t\t\t<ForceStrength>" << mForceStrength << "</ForceStrength>\n";
93
94 // Call method on direct parent class
96}
97
98// Explicit instantiation
99template class VertexCryptBoundaryForce<1>;
100template class VertexCryptBoundaryForce<2>;
101template class VertexCryptBoundaryForce<3>;
102
103// Serialization for Boost >= 1.36
#define EXCEPTION(message)
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
virtual void OutputForceParameters(out_stream &rParamsFile)=0
NodeIterator GetNodeIteratorEnd()
NodeIterator GetNodeIteratorBegin(bool skipDeletedNodes=true)
MutableVertexMesh< DIM, DIM > & rGetMesh()
void AddForceContribution(AbstractCellPopulation< DIM > &rCellPopulation)
VertexCryptBoundaryForce(double forceStrength=1.0)
void OutputForceParameters(out_stream &rParamsFile)