AbstractSimpleGenerationBasedCellCycleModel Class Reference

#include <AbstractSimpleGenerationBasedCellCycleModel.hpp>

Inheritance diagram for AbstractSimpleGenerationBasedCellCycleModel:

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Collaboration diagram for AbstractSimpleGenerationBasedCellCycleModel:

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List of all members.

Public Member Functions
	AbstractSimpleGenerationBasedCellCycleModel ()
virtual	~AbstractSimpleGenerationBasedCellCycleModel ()
void	ResetForDivision ()
void	InitialiseDaughterCell ()
void	SetGeneration (unsigned generation)
unsigned	GetGeneration () const
Protected Attributes
unsigned	mGeneration
Private Member Functions
template<class Archive>
void	serialize (Archive &archive, const unsigned int version)
Friends
class	boost::serialization::access

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Detailed Description

This class contains all the things common to simple generation-based cell cycle models, i.e. models in which the length of cell cycle phases are determined when the cell cycle model is created, rather than evaluated 'on the fly' by ODEs and suchlike, and in which each cell has a 'generation'.

N.B. Whether or not the cell should actually divide may depend on Wnt / Oxygen etc. in subclasses.

Definition at line 49 of file AbstractSimpleGenerationBasedCellCycleModel.hpp.

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Constructor & Destructor Documentation

AbstractSimpleGenerationBasedCellCycleModel::AbstractSimpleGenerationBasedCellCycleModel

(

)

Default constructor - creates an AbstractSimpleCellCycleModel.

Definition at line 31 of file AbstractSimpleGenerationBasedCellCycleModel.cpp.

virtual AbstractSimpleGenerationBasedCellCycleModel::~AbstractSimpleGenerationBasedCellCycleModel

(

)

[inline, virtual]

Default destructor.

Definition at line 83 of file AbstractSimpleGenerationBasedCellCycleModel.hpp.

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Member Function Documentation

template<class Archive>

void AbstractSimpleGenerationBasedCellCycleModel::serialize	(	Archive &	archive,
		const unsigned int	version
	)			[inline, private]

Archive the cell cycle model.

Parameters:

	archive	the archive
	version	the current version of this class

Reimplemented from AbstractSimpleCellCycleModel.

Reimplemented in FixedDurationGenerationBasedCellCycleModel, and StochasticDurationGenerationBasedCellCycleModel.

Definition at line 62 of file AbstractSimpleGenerationBasedCellCycleModel.hpp.

References mGeneration.

void AbstractSimpleGenerationBasedCellCycleModel::ResetForDivision

(

)

[virtual]

Overridden ResetForDivision() method.

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 37 of file AbstractSimpleGenerationBasedCellCycleModel.cpp.

References TissueCell::GetCellType(), TissueConfig::Instance(), mGeneration, AbstractCellCycleModel::mpCell, AbstractSimpleCellCycleModel::ResetForDivision(), and TissueCell::SetCellType().

void AbstractSimpleGenerationBasedCellCycleModel::InitialiseDaughterCell

(

)

[virtual]

Set the new cell's G1 duration once it has been created after division. The duration will be based on cell type.

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 52 of file AbstractSimpleGenerationBasedCellCycleModel.cpp.

References AbstractSimpleCellCycleModel::InitialiseDaughterCell(), TissueConfig::Instance(), mGeneration, AbstractCellCycleModel::mpCell, and TissueCell::SetCellType().

void AbstractSimpleGenerationBasedCellCycleModel::SetGeneration

(

unsigned

generation

)

Sets the cell's generation.

Parameters:

generation

the cell's generation

Definition at line 76 of file AbstractSimpleGenerationBasedCellCycleModel.cpp.

References mGeneration.

unsigned AbstractSimpleGenerationBasedCellCycleModel::GetGeneration

(

)

const

Returns the cell's generation.

Definition at line 82 of file AbstractSimpleGenerationBasedCellCycleModel.cpp.

References mGeneration.

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Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractSimpleCellCycleModel.

Reimplemented in FixedDurationGenerationBasedCellCycleModel, and StochasticDurationGenerationBasedCellCycleModel.

Definition at line 54 of file AbstractSimpleGenerationBasedCellCycleModel.hpp.

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Member Data Documentation

unsigned AbstractSimpleGenerationBasedCellCycleModel::mGeneration [protected]

The generation of this cell (STEM cells have a generation of 0)

Definition at line 71 of file AbstractSimpleGenerationBasedCellCycleModel.hpp.

Referenced by GetGeneration(), InitialiseDaughterCell(), ResetForDivision(), serialize(), and SetGeneration().

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The documentation for this class was generated from the following files:

• /tmp/release_1.1/cancer/src/tissue/cell/cycle/AbstractSimpleGenerationBasedCellCycleModel.hpp
• /tmp/release_1.1/cancer/src/tissue/cell/cycle/AbstractSimpleGenerationBasedCellCycleModel.cpp