AbstractSimpleCellCycleModel Class Reference
#include <AbstractSimpleCellCycleModel.hpp>
Inherits AbstractCellCycleModel.
Inherited by AbstractSimpleGenerationBasedCellCycleModel, and SimpleWntCellCycleModel.
Public Member Functions | |
| AbstractSimpleCellCycleModel () | |
| virtual | ~AbstractSimpleCellCycleModel () |
| virtual void | ResetForDivision () |
| virtual void | UpdateCellCyclePhase () |
| void | InitialiseDaughterCell () |
| virtual void | Initialise () |
Protected Member Functions | |
| virtual void | SetG1Duration () |
Private Member Functions | |
| template<class Archive > | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Detailed Description
This class contains all the things common to 'simple' cell cycle models
i.e. models where the length of cell cycle phases are determined when the cell cycle model is created, rather than evaluated 'on the fly' by ODEs and suchlike.
N.B. Whether or not the cell should actually divide may still depend on Wnt / Oxygen etc. in subclasses...
Definition at line 46 of file AbstractSimpleCellCycleModel.hpp.
Constructor & Destructor Documentation
| AbstractSimpleCellCycleModel::AbstractSimpleCellCycleModel | ( | ) | [inline] |
Default constructor - creates an AbstractSimpleCellCycleModel.
Definition at line 78 of file AbstractSimpleCellCycleModel.hpp.
| virtual AbstractSimpleCellCycleModel::~AbstractSimpleCellCycleModel | ( | ) | [inline, virtual] |
Default destructor.
Definition at line 84 of file AbstractSimpleCellCycleModel.hpp.
Member Function Documentation
| void AbstractSimpleCellCycleModel::Initialise | ( | void | ) | [virtual] |
See AbstractCellCycleModel::Initialise()
Reimplemented from AbstractCellCycleModel.
Reimplemented in SingleOdeWntCellCycleModel.
Definition at line 31 of file AbstractSimpleCellCycleModel.cpp.
References SetG1Duration().
| void AbstractSimpleCellCycleModel::InitialiseDaughterCell | ( | ) | [virtual] |
Set the new cell's G1 duration once it has been created after division. The duration will be based on cell type.
Reimplemented from AbstractCellCycleModel.
Reimplemented in SimpleWntCellCycleModel, and AbstractSimpleGenerationBasedCellCycleModel.
Definition at line 37 of file AbstractSimpleCellCycleModel.cpp.
References SetG1Duration().
| void AbstractSimpleCellCycleModel::ResetForDivision | ( | ) | [virtual] |
See AbstractCellCycleModel::ResetForDivision()
Reimplemented from AbstractCellCycleModel.
Reimplemented in AbstractSimpleGenerationBasedCellCycleModel.
Definition at line 68 of file AbstractSimpleCellCycleModel.cpp.
References SimulationTime::GetTime(), SimulationTime::Instance(), AbstractCellCycleModel::mBirthTime, and SetG1Duration().
| void AbstractSimpleCellCycleModel::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Archive the cell cycle model.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractCellCycleModel.
Reimplemented in SimpleWntCellCycleModel, AbstractSimpleGenerationBasedCellCycleModel, FixedDurationGenerationBasedCellCycleModel, and StochasticDurationGenerationBasedCellCycleModel.
Definition at line 59 of file AbstractSimpleCellCycleModel.hpp.
| void AbstractSimpleCellCycleModel::SetG1Duration | ( | ) | [protected, virtual] |
Subclasses can override this function if they wish, this just allocates the default values for each of the different cell types' G1 durations as defined in the TissueConfig singleton.
Reimplemented in SimpleWntCellCycleModel, and StochasticDurationGenerationBasedCellCycleModel.
Definition at line 44 of file AbstractSimpleCellCycleModel.cpp.
References TissueCell::GetCellProliferativeType(), TissueConfig::GetStemCellG1Duration(), TissueConfig::GetTransitCellG1Duration(), TissueConfig::Instance(), AbstractCellCycleModel::mG1Duration, and AbstractCellCycleModel::mpCell.
Referenced by Initialise(), InitialiseDaughterCell(), and ResetForDivision().
| void AbstractSimpleCellCycleModel::UpdateCellCyclePhase | ( | ) | [virtual] |
Default UpdateCellCyclePhase() method for a simple cell cycle model.
Can be overridden if they should do something more subtle.
Implements AbstractCellCycleModel.
Reimplemented in SimpleWntCellCycleModel, and SingleOdeWntCellCycleModel.
Definition at line 76 of file AbstractSimpleCellCycleModel.cpp.
References AbstractCellCycleModel::GetAge(), TissueCell::GetCellProliferativeType(), AbstractCellCycleModel::GetG2Duration(), AbstractCellCycleModel::GetMDuration(), AbstractCellCycleModel::GetSDuration(), AbstractCellCycleModel::mCurrentCellCyclePhase, AbstractCellCycleModel::mG1Duration, and AbstractCellCycleModel::mpCell.
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCellCycleModel.
Reimplemented in SimpleWntCellCycleModel, SingleOdeWntCellCycleModel, AbstractSimpleGenerationBasedCellCycleModel, FixedDurationGenerationBasedCellCycleModel, and StochasticDurationGenerationBasedCellCycleModel.
Definition at line 51 of file AbstractSimpleCellCycleModel.hpp.
The documentation for this class was generated from the following files:
- /tmp/release_2.0/cell_based/src/tissue/cell/cycle/AbstractSimpleCellCycleModel.hpp
- /tmp/release_2.0/cell_based/src/tissue/cell/cycle/AbstractSimpleCellCycleModel.cpp
