CML_noble_varghese_kohl_noble_1998_basic_with_sac Class Reference

#include <NobleVargheseKohlNoble1998WithSac.hpp>

Inheritance diagram for CML_noble_varghese_kohl_noble_1998_basic_with_sac:

Collaboration diagram for CML_noble_varghese_kohl_noble_1998_basic_with_sac:

List of all members.

Public Member Functions

CML_noble_varghese_kohl_noble_1998_basic_with_sac (boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)

~CML_noble_varghese_kohl_noble_1998_basic_with_sac ()

double GetIIonic (const std::vector< double > *pStateVariables=NULL)

void EvaluateYDerivatives (double var_environment__time, const std::vector< double > &rY, std::vector< double > &rDY)

void SetStretch (double stretch)

double GetStretch ()

double GetIntracellularCalciumConcentration ()

Private Member Functions

template<class Archive>

void serialize (Archive &archive, const unsigned int version)

Private Attributes

double mStretch

Friends

class boost::serialization::access

Detailed Description

The Noble98 'Basic' model, but hand-altered to add a stretch activation channel ionic current, which is dependent on the stretch the cell is under (an additional member variable which can be set be the user/mechanics solver

Definition at line 48 of file NobleVargheseKohlNoble1998WithSac.hpp.

Constructor & Destructor Documentation

CML_noble_varghese_kohl_noble_1998_basic_with_sac::CML_noble_varghese_kohl_noble_1998_basic_with_sac	(	boost::shared_ptr< AbstractIvpOdeSolver >	pSolver,
		boost::shared_ptr< AbstractStimulusFunction >	pIntracellularStimulus
	)

Constructor.

Parameters:

	pSolver	ODE solver to use
	pIntracellularStimulus	intracellular stimulus to apply

Definition at line 32 of file NobleVargheseKohlNoble1998WithSac.cpp.

References AbstractCardiacCell::Init(), OdeSystemInformation< ODE_SYSTEM >::Instance(), AbstractParameterisedSystem< std::vector< double > >::mpSystemInfo, and mStretch.

CML_noble_varghese_kohl_noble_1998_basic_with_sac::~CML_noble_varghese_kohl_noble_1998_basic_with_sac ( void )

Destructor.

Definition at line 45 of file NobleVargheseKohlNoble1998WithSac.cpp.

Member Function Documentation

template<class Archive>

void CML_noble_varghese_kohl_noble_1998_basic_with_sac::serialize	(	Archive &	archive,
		const unsigned int	version
	)			`[inline, private]`

Checkpointing.

Parameters:

	archive
	version

Reimplemented from AbstractCardiacCell.

Definition at line 57 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetIIonic ( const std::vector< double > * pStateVariables = NULL ) [virtual]

Compute the total ionic current

Parameters:

pStateVariables

state variable vector; if not given, use cell's internal state

Implements AbstractCardiacCellInterface.

Definition at line 49 of file NobleVargheseKohlNoble1998WithSac.cpp.

References HeartConfig::GetCapacitance(), HeartConfig::Instance(), mStretch, and AbstractParameterisedSystem< std::vector< double > >::rGetStateVariables().

void CML_noble_varghese_kohl_noble_1998_basic_with_sac::EvaluateYDerivatives	(	double	var_environment__time,
		const std::vector< double > &	rY,
		std::vector< double > &	rDY
	)			`[virtual]`

Evaluate the RHS of this cell's ODE system.

Parameters:

	var_environment__time	current simulation time
	rY	state variable vector
	rDY	will be filled in with the derivatives

Implements AbstractOdeSystem.

Definition at line 244 of file NobleVargheseKohlNoble1998WithSac.cpp.

References AbstractCardiacCellInterface::GetStimulus(), AbstractCardiacCellInterface::mSetVoltageDerivativeToZero, and mStretch.

void CML_noble_varghese_kohl_noble_1998_basic_with_sac::SetStretch ( double stretch ) [inline, virtual]

Set the stretch (overloaded)

Parameters:

stretch

stretch

Reimplemented from AbstractCardiacCell.

Definition at line 98 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetStretch ( ) [inline]

Get the stretch

Definition at line 107 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetIntracellularCalciumConcentration ( ) [inline, virtual]

Get the intracellular calcium concentration

Returns:: the intracellular calcium concentration

Reimplemented from AbstractCardiacCell.

Definition at line 117 of file NobleVargheseKohlNoble1998WithSac.hpp.

References AbstractParameterisedSystem< std::vector< double > >::mStateVariables.

Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCardiacCell.

Definition at line 50 of file NobleVargheseKohlNoble1998WithSac.hpp.

Member Data Documentation

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::mStretch [private]

The stretch the cell is under - affects the stretch-activated-channel ionic current

Definition at line 65 of file NobleVargheseKohlNoble1998WithSac.hpp.

Referenced by CML_noble_varghese_kohl_noble_1998_basic_with_sac(), EvaluateYDerivatives(), GetIIonic(), GetStretch(), serialize(), and SetStretch().

The documentation for this class was generated from the following files:

heart/src/odes/ionicmodels/NobleVargheseKohlNoble1998WithSac.hpp
heart/src/odes/ionicmodels/NobleVargheseKohlNoble1998WithSac.cpp


Public Member Functions
	CML_noble_varghese_kohl_noble_1998_basic_with_sac (boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)
	~CML_noble_varghese_kohl_noble_1998_basic_with_sac ()
double	GetIIonic (const std::vector< double > *pStateVariables=NULL)
void	EvaluateYDerivatives (double var_environment__time, const std::vector< double > &rY, std::vector< double > &rDY)
void	SetStretch (double stretch)
double	GetStretch ()
double	GetIntracellularCalciumConcentration ()
Private Member Functions
template<class Archive>
void	serialize (Archive &archive, const unsigned int version)
Private Attributes
double	mStretch
Friends
class	boost::serialization::access