AbstractOdeBasedPhaseBasedCellCycleModel.hpp

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#ifndef ABSTRACTODEBASEDPHASEBASEDCELLCYCLEMODEL_HPP_
#define ABSTRACTODEBASEDPHASEBASEDCELLCYCLEMODEL_HPP_

#include <vector>

#include "ChasteSerialization.hpp"
#include "ClassIsAbstract.hpp"
#include <boost/serialization/base_object.hpp>

#include "AbstractPhaseBasedCellCycleModel.hpp"
#include "CellCycleModelOdeHandler.hpp"
#include "SimulationTime.hpp"

class AbstractOdeBasedPhaseBasedCellCycleModel : public AbstractPhaseBasedCellCycleModel, public CellCycleModelOdeHandler
{
private:

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractPhaseBasedCellCycleModel>(*this);
        archive & boost::serialization::base_object<CellCycleModelOdeHandler>(*this);
        archive & mDivideTime;
        archive & mG2PhaseStartTime;
    }

protected:

    double mDivideTime;

    double mG2PhaseStartTime;

    AbstractOdeBasedPhaseBasedCellCycleModel(const AbstractOdeBasedPhaseBasedCellCycleModel& rModel);

public:

    AbstractOdeBasedPhaseBasedCellCycleModel(double lastTime = SimulationTime::Instance()->GetTime(),
                                   boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());

    virtual ~AbstractOdeBasedPhaseBasedCellCycleModel();

    virtual void UpdateCellCyclePhase();

    double GetOdeStopTime();

    void SetBirthTime(double birthTime);

    virtual void ResetForDivision();

    virtual void OutputCellCycleModelParameters(out_stream& rParamsFile);
};

CLASS_IS_ABSTRACT(AbstractOdeBasedPhaseBasedCellCycleModel)

#endif /*ABSTRACTODEBASEDPHASEBASEDCELLCYCLEMODEL_HPP_*/