CellRadiusWriter.cpp

/*

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*/

#include "CellRadiusWriter.hpp"
#include "NodeBasedCellPopulation.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellRadiusWriter<ELEMENT_DIM, SPACE_DIM>::CellRadiusWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("cellradii.dat")
{
    this->mVtkCellDataName = "Cell radii";
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double CellRadiusWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    double cell_radius = 0.0;
    if (dynamic_cast<NodeBasedCellPopulation<SPACE_DIM>*>(pCellPopulation))
    {
        unsigned node_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
        cell_radius = pCellPopulation->GetNode(node_index)->GetRadius();
    }
    return cell_radius;
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellRadiusWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
    unsigned cell_id = pCell->GetCellId();
    c_vector<double, SPACE_DIM> cell_location = pCellPopulation->GetLocationOfCellCentre(pCell);

    double cell_radius = 0.0;
    if (dynamic_cast<NodeBasedCellPopulation<SPACE_DIM>*>(pCellPopulation))
    {
        unsigned node_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
        cell_radius = pCellPopulation->GetNode(node_index)->GetRadius();
    }

    *this->mpOutStream << location_index << " " << cell_id << " ";
    for (unsigned i=0; i<SPACE_DIM; i++)
    {
        *this->mpOutStream << cell_location[i] << " ";
    }

    *this->mpOutStream << cell_radius << " ";
}

// Explicit instantiation
template class CellRadiusWriter<1,1>;
template class CellRadiusWriter<1,2>;
template class CellRadiusWriter<2,2>;
template class CellRadiusWriter<1,3>;
template class CellRadiusWriter<2,3>;
template class CellRadiusWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellRadiusWriter)