NodeLocationWriter.cpp

/*

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 * Redistributions in binary form must reproduce the above copyright notice,
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   software without specific prior written permission.

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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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*/

#include "NodeLocationWriter.hpp"
#include "AbstractCellPopulation.hpp"
#include "MeshBasedCellPopulation.hpp"
#include "CaBasedCellPopulation.hpp"
#include "NodeBasedCellPopulation.hpp"
#include "PottsBasedCellPopulation.hpp"
#include "VertexBasedCellPopulation.hpp"

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
NodeLocationWriter<ELEMENT_DIM, SPACE_DIM>::NodeLocationWriter()
    : AbstractCellPopulationWriter<ELEMENT_DIM, SPACE_DIM>("results.viznodes")
{
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void NodeLocationWriter<ELEMENT_DIM, SPACE_DIM>::VisitAnyPopulation(AbstractCellPopulation<SPACE_DIM, SPACE_DIM>* pCellPopulation)
{
    for (typename AbstractMesh<SPACE_DIM, SPACE_DIM>::NodeIterator node_iter = pCellPopulation->rGetMesh().GetNodeIteratorBegin();
         node_iter != pCellPopulation->rGetMesh().GetNodeIteratorEnd();
         ++node_iter)
    {
        if (!node_iter->IsDeleted())
        {
            const c_vector<double,SPACE_DIM>& position = node_iter->rGetLocation();

            for (unsigned i=0; i<SPACE_DIM; i++)
            {
                *this->mpOutStream << position[i] << " ";
            }
        }
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void NodeLocationWriter<ELEMENT_DIM, SPACE_DIM>::Visit(MeshBasedCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    for (typename AbstractMesh<ELEMENT_DIM, SPACE_DIM>::NodeIterator node_iter = pCellPopulation->rGetMesh().GetNodeIteratorBegin();
            node_iter != pCellPopulation->rGetMesh().GetNodeIteratorEnd();
            ++node_iter)
    {
        if (!node_iter->IsDeleted())
        {
            const c_vector<double,SPACE_DIM>& position = node_iter->rGetLocation();

            for (unsigned i=0; i<SPACE_DIM; i++)
            {
                *this->mpOutStream << position[i] << " ";
            }
        }
    }
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void NodeLocationWriter<ELEMENT_DIM, SPACE_DIM>::Visit(CaBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void NodeLocationWriter<ELEMENT_DIM, SPACE_DIM>::Visit(NodeBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void NodeLocationWriter<ELEMENT_DIM, SPACE_DIM>::Visit(PottsBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void NodeLocationWriter<ELEMENT_DIM, SPACE_DIM>::Visit(VertexBasedCellPopulation<SPACE_DIM>* pCellPopulation)
{
    VisitAnyPopulation(pCellPopulation);
}

// Explicit instantiation
template class NodeLocationWriter<1,1>;
template class NodeLocationWriter<1,2>;
template class NodeLocationWriter<2,2>;
template class NodeLocationWriter<1,3>;
template class NodeLocationWriter<2,3>;
template class NodeLocationWriter<3,3>;

#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(NodeLocationWriter)