#include <NodeLocationWriter.hpp>

Inheritance diagram for NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	NodeLocationWriter ()

void	VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation)

virtual void	Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

virtual void	Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellPopulationWriter (const std::string &rFileName)

virtual void	WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellBasedWriter (const std::string &rFileName)

virtual	~AbstractCellBasedWriter ()

void	CloseFile ()

virtual void	OpenOutputFile (OutputFileHandler &rOutputFileHandler)

void	OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)

virtual void	WriteTimeStamp ()

virtual void	WriteNewline ()

void	SetFileName (std::string fileName)

std::string	GetFileName ()

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string	mFileName

out_stream	mpOutStream

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing node locations from a cell population to file.

The output file is called results.viznodes by default.

Definition at line 49 of file NodeLocationWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::NodeLocationWriter ( )

Default constructor.

Definition at line 45 of file NodeLocationWriter.cpp.

Referenced by NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::serialize().

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Serialize the object and its member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 61 of file NodeLocationWriter.hpp.

References EXPORT_TEMPLATE_CLASS_ALL_DIMS, NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::NodeLocationWriter(), NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::Visit(), and NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the location of each Node.

Outputs a line of space-separated values of the form: ... [node x-pos] [node y-pos] [node z-pos] ...

where z-pos is used in 3 dimensions. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the MeshBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 70 of file NodeLocationWriter.cpp.

References AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream, and MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::rGetMesh().

Referenced by NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::serialize().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( CaBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the location of each Node.

Outputs a line of space-separated values of the form: ... [node x-pos] [node y-pos] [node z-pos] ...

where z-pos is used in 3 dimensions. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the CaBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 89 of file NodeLocationWriter.cpp.

References NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( NodeBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the location of each Node.

Outputs a line of space-separated values of the form: ... [node x-pos] [node y-pos] [node z-pos] ...

where z-pos is used in 3 dimensions. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the NodeBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 95 of file NodeLocationWriter.cpp.

References NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( PottsBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the location of each Node.

Outputs a line of space-separated values of the form: ... [node x-pos] [node y-pos] [node z-pos] ...

where z-pos is used in 3 dimensions. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the PottsBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 101 of file NodeLocationWriter.cpp.

References NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( VertexBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the location of each Node.

Outputs a line of space-separated values of the form: ... [node x-pos] [node y-pos] [node z-pos] ...

where z-pos is used in 3 dimensions. Here the indexing of nodes is as given by the NodeIterator.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the VertexBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 107 of file NodeLocationWriter.cpp.

References EXPORT_TEMPLATE_CLASS_ALL_DIMS, and NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation ( AbstractCellPopulation< SPACE_DIM, SPACE_DIM > * pCellPopulation )

Visit any population and write the data. This is the same structure for any population.

Parameters

pCellPopulation a pointer to the population to visit.

Definition at line 51 of file NodeLocationWriter.cpp.

References AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream, and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::rGetMesh().

Referenced by NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::serialize(), and NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >::Visit().

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 53 of file NodeLocationWriter.hpp.

The documentation for this class was generated from the following files:

cell_based/src/writers/population_writers/NodeLocationWriter.hpp
cell_based/src/writers/population_writers/NodeLocationWriter.cpp

Public Member Functions

Private Member Functions

Friends

Additional Inherited Members

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> class NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class NodeLocationWriter< ELEMENT_DIM, SPACE_DIM >