#include <AbstractTetrahedralElement.hpp>

Inheritance diagram for AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	AbstractTetrahedralElement (unsigned index, const std::vector< Node< SPACE_DIM > * > &rNodes)

	AbstractTetrahedralElement (unsigned index=INDEX_IS_NOT_USED)

virtual	~AbstractTetrahedralElement ()

c_vector< double, SPACE_DIM >	CalculateCentroid () const

void	CalculateJacobian (c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant)

void	CalculateWeightedDirection (c_vector< double, SPACE_DIM > &rWeightedDirection, double &rJacobianDeterminant)

c_vector< double, SPACE_DIM >	CalculateNormal ()

void	CalculateInverseJacobian (c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian, double &rJacobianDeterminant, c_matrix< double, ELEMENT_DIM, SPACE_DIM > &rInverseJacobian)

double	GetVolume (double determinant) const

void	GetStiffnessMatrixGlobalIndices (unsigned problemDim, unsigned *pIndices) const

Public Member Functions inherited from AbstractElement< ELEMENT_DIM, SPACE_DIM >
	AbstractElement (unsigned index, const std::vector< Node< SPACE_DIM > * > &rNodes)

	AbstractElement (unsigned index=INDEX_IS_NOT_USED)

virtual	~AbstractElement ()

virtual void	UpdateNode (const unsigned &rIndex, Node< SPACE_DIM > *pNode)=0

void	ReplaceNode (Node< SPACE_DIM > pOldNode, Node< SPACE_DIM > pNewNode)

virtual void	MarkAsDeleted ()=0

virtual void	RegisterWithNodes ()=0

double	GetNodeLocation (unsigned localIndex, unsigned dimension) const

c_vector< double, SPACE_DIM >	GetNodeLocation (unsigned localIndex) const

unsigned	GetNodeGlobalIndex (unsigned localIndex) const

Node< SPACE_DIM > *	GetNode (unsigned localIndex) const

unsigned	GetNumNodes () const

void	AddNode (Node< SPACE_DIM > *pNode)

bool	IsDeleted () const

unsigned	GetIndex () const

void	SetIndex (unsigned index)

bool	GetOwnership () const

void	SetOwnership (bool ownership)

void	SetAttribute (double attribute)

double	GetAttribute ()

unsigned	GetUnsignedAttribute ()

void	AddElementAttribute (double attribute)

std::vector< double > &	rGetElementAttributes ()

unsigned	GetNumElementAttributes ()

Protected Member Functions
void	RefreshJacobian (c_matrix< double, SPACE_DIM, ELEMENT_DIM > &rJacobian)

Protected Member Functions inherited from AbstractElement< ELEMENT_DIM, SPACE_DIM >
void	ConstructElementAttributes ()

Additional Inherited Members
Protected Attributes inherited from AbstractElement< ELEMENT_DIM, SPACE_DIM >
std::vector< Node< SPACE_DIM > * >	mNodes

unsigned	mIndex

bool	mIsDeleted

bool	mOwnership

ElementAttributes< ELEMENT_DIM, SPACE_DIM > *	mpElementAttributes

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >

This abstract class defines a tetrahedral element for use in the Finite Element Method.

Definition at line 52 of file AbstractTetrahedralElement.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::AbstractTetrahedralElement	(	unsigned	index,
		const std::vector< Node< SPACE_DIM > * > &	rNodes
	)

Constructor which takes in a vector of nodes.

Parameters

index	the index of the element in the mesh
rNodes	the nodes owned by the element

Definition at line 63 of file AbstractTetrahedralElement.cpp.

References AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateWeightedDirection(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::AbstractTetrahedralElement ( unsigned index = INDEX_IS_NOT_USED )

Default constructor, which doesn't fill in any nodes. The nodes must be added later.

Parameters

index the index of the element in the mesh (defaults to INDEX_IS_NOT_USED)

Definition at line 104 of file AbstractTetrahedralElement.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

virtual AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::~AbstractTetrahedralElement ( )

inlinevirtual

Virtual destructor, since this class has virtual methods.

Definition at line 84 of file AbstractTetrahedralElement.hpp.

References AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateCentroid(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateInverseJacobian(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateNormal(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateWeightedDirection(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::GetStiffnessMatrixGlobalIndices(), and AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::GetVolume().

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

c_vector< double, SPACE_DIM > AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateCentroid ( ) const

Returns: the location of the centroid of the element.

Definition at line 218 of file AbstractTetrahedralElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mNodes.

Referenced by AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::~AbstractTetrahedralElement(), and AbstractTetrahedralElement< 0, SPACE_DIM >::~AbstractTetrahedralElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateInverseJacobian	(	c_matrix< double, SPACE_DIM, ELEMENT_DIM > &	rJacobian,
		double &	rJacobianDeterminant,
		c_matrix< double, ELEMENT_DIM, SPACE_DIM > &	rInverseJacobian
	)

Compute the Jacobian and the inverse Jacobian for this element.

Parameters

rJacobian	the Jacobian matrix (output)
rJacobianDeterminant	the determinant of the Jacobian (output)
rInverseJacobian	the inverse Jacobian matrix (output)

Definition at line 229 of file AbstractTetrahedralElement.cpp.

References AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian(), and Inverse().

Referenced by AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::AssembleOnCableElement(), AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::CalculateOnElement(), Element< ELEMENT_DIM, SPACE_DIM >::CalculateQuality(), Element< ELEMENT_DIM, SPACE_DIM >::CalculateXi(), and AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::~AbstractTetrahedralElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian	(	c_matrix< double, SPACE_DIM, ELEMENT_DIM > &	rJacobian,
		double &	rJacobianDeterminant
	)

Compute the Jacobian for this element.

Parameters

rJacobian	the Jacobian matrix
rJacobianDeterminant	the determinant of the Jacobian

Definition at line 109 of file AbstractTetrahedralElement.cpp.

References Determinant(), EXCEPTION, AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeLocation(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIndex, and AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::RefreshJacobian().

Referenced by AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::AbstractTetrahedralElement(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateInverseJacobian(), MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfCell(), and AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::~AbstractTetrahedralElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

c_vector< double, SPACE_DIM > AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateNormal ( )

Returns: computed a unit vector normal to this element, if possible.

Definition at line 197 of file AbstractTetrahedralElement.cpp.

References AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateWeightedDirection(), and EXCEPTION.

Referenced by AbstractNonlinearElasticitySolver< DIM >::AssembleOnBoundaryElementForPressureOnDeformedBc(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::~AbstractTetrahedralElement(), and AbstractTetrahedralElement< 0, SPACE_DIM >::~AbstractTetrahedralElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateWeightedDirection	(	c_vector< double, SPACE_DIM > &	rWeightedDirection,
		double &	rJacobianDeterminant
	)

Compute the weighted direction for this element.

Parameters

rWeightedDirection	the weighted direction vector
rJacobianDeterminant	the determinant of the Jacobian

Definition at line 149 of file AbstractTetrahedralElement.cpp.

References EXCEPTION, NEVER_REACHED, AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::RefreshJacobian(), and SubDeterminant().

Referenced by AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::AbstractTetrahedralElement(), AbstractTetrahedralElement< 0, SPACE_DIM >::AbstractTetrahedralElement(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateNormal(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::~AbstractTetrahedralElement(), and AbstractTetrahedralElement< 0, SPACE_DIM >::~AbstractTetrahedralElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::GetStiffnessMatrixGlobalIndices	(	unsigned	problemDim,
		unsigned *	pIndices
	)		const

Place in the pIndices array, the global indices (within the stiffness matrix) of the degrees of freedom associated with this element.

Parameters

problemDim	the problem dimension e.g. 2 for Bidomain.
pIndices	where to store results: an unsigned array with ELEMENT_DIM+1 entries.

Definition at line 262 of file AbstractTetrahedralElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetNodeGlobalIndex().

Referenced by AbstractFeCableIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::DoAssemble(), AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::DoAssemble(), AbstractFeVolumeIntegralAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >::DoAssemble(), AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::~AbstractTetrahedralElement(), and AbstractTetrahedralElement< 0, SPACE_DIM >::~AbstractTetrahedralElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::GetVolume ( double determinant ) const

Returns: the volume of an element (or area in 2d, or length in 1d)

Parameters

determinant a pre-calculated Jacobian determinant for this element.

Returns: volume (which is simply the determinant weighted by the SPACE_DIM)

Definition at line 240 of file AbstractTetrahedralElement.cpp.

References AbstractElement< ELEMENT_DIM, SPACE_DIM >::mIsDeleted.

Referenced by MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetVolumeOfCell(), and AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::~AbstractTetrahedralElement().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::RefreshJacobian ( c_matrix< double, SPACE_DIM, ELEMENT_DIM > & rJacobian )

protected

Refresh the Jacobian for this element.

Parameters

rJacobian the Jacobian matrix

Definition at line 47 of file AbstractTetrahedralElement.cpp.

References EXCEPTION.

Referenced by AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateJacobian(), and AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >::CalculateWeightedDirection().

The documentation for this class was generated from the following files:

mesh/src/common/AbstractTetrahedralElement.hpp
mesh/src/common/AbstractTetrahedralElement.cpp

Public Member Functions

Protected Member Functions

Additional Inherited Members

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> class AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >

Constructor & Destructor Documentation

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >