#include <CellDataItemWriter.hpp>

Inheritance diagram for CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	CellDataItemWriter (std::string cellDataVariableName="")

double	GetCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

virtual void	VisitCell (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

std::string	GetCellDataVariableName () const

Public Member Functions inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellWriter (const std::string &rFileName)

virtual c_vector< double, SPACE_DIM >	GetVectorCellDataForVtkOutput (CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

bool	GetOutputScalarData ()

bool	GetOutputVectorData ()

void	SetVtkCellDataName (std::string vtkCellDataName)

void	SetVtkVectorCellDataName (std::string vtkCellDataName)

std::string	GetVtkCellDataName ()

std::string	GetVtkVectorCellDataName ()

Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellBasedWriter (const std::string &rFileName)

virtual	~AbstractCellBasedWriter ()

void	CloseFile ()

virtual void	OpenOutputFile (OutputFileHandler &rOutputFileHandler)

void	OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)

virtual void	WriteTimeStamp ()

virtual void	WriteNewline ()

void	SetFileName (std::string fileName)

std::string	GetFileName ()

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Private Attributes
std::string	mCellDataVariableName

Friends
class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >
bool	mOutputScalarData

bool	mOutputVectorData

std::string	mVtkCellDataName

std::string	mVtkVectorCellDataName

Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string	mFileName

out_stream	mpOutStream

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing to file, for each cell, the level of a variable stored in CellData.

The output file is called cell[variable name].dat. If VTK is switched on, then the writer also specifies the VTK output for each cell, which is stored in the VTK cell data "Cell [variable name]".

Note: if VTK is switched on then everything in CellData will be output as VTK cell data already but this is the best way to output to a .dat file.

Definition at line 55 of file CellDataItemWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::CellDataItemWriter ( std::string cellDataVariableName = "" )

Constructor.

Parameters

cellDataVariableName the item in CellData to output (defaults to "")

Definition at line 40 of file CellDataItemWriter.cpp.

References CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::mCellDataVariableName, and AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >::mVtkCellDataName.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

double CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput	(	CellPtr	pCell,
		AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *	pCellPopulation
	)

virtual

Overridden GetCellDataForVtkOutput() method.

Get a double associated with a cell. This method reduces duplication of code between the methods VisitCell() and AddVtkData().

Parameters

pCell	a cell
pCellPopulation	a pointer to the cell population owning the cell

Returns: data associated with the cell

Reimplemented from AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 48 of file CellDataItemWriter.cpp.

References CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::mCellDataVariableName.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::string CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataVariableName ( ) const

Returns: mCellDataVariableName used in archiving.

Definition at line 78 of file CellDataItemWriter.cpp.

References EXPORT_TEMPLATE_CLASS_ALL_DIMS, and CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::mCellDataVariableName.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Serialize the object and its member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 67 of file CellDataItemWriter.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell	(	CellPtr	pCell,
		AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *	pCellPopulation
	)

virtual

Overridden VisitCell() method.

Visit a cell and write its cell data item.

Outputs a line of space-separated values of the form: ...[location index] [cell id] [x-pos] [y-pos] [z-pos] [cell data item]... with [y-pos] and [z-pos] included for 2 and 3 dimensional simulations, respectively.

This is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCell	a cell
pCellPopulation	a pointer to the cell population owning the cell

Implements AbstractCellWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 55 of file CellDataItemWriter.cpp.

References AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationIndexUsingCell(), AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetLocationOfCellCentre(), CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::mCellDataVariableName, and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 59 of file CellDataItemWriter.hpp.

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

std::string CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::mCellDataVariableName

private

The item stored in CellData to output.

Definition at line 76 of file CellDataItemWriter.hpp.

Referenced by CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::CellDataItemWriter(), CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataForVtkOutput(), CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::GetCellDataVariableName(), and CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >::VisitCell().

The documentation for this class was generated from the following files:

cell_based/src/writers/cell_writers/CellDataItemWriter.hpp
cell_based/src/writers/cell_writers/CellDataItemWriter.cpp

Public Member Functions

Private Member Functions

Private Attributes

Friends

Additional Inherited Members

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> class CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellDataItemWriter< ELEMENT_DIM, SPACE_DIM >