#include <StochasticOxygenBasedCellCycleModel.hpp>

Inheritance diagram for StochasticOxygenBasedCellCycleModel:

Collaboration diagram for StochasticOxygenBasedCellCycleModel:

Public Member Functions
	StochasticOxygenBasedCellCycleModel ()

void	InitialiseDaughterCell ()

void	Initialise ()

void	ResetForDivision ()

double	GetG2Duration () const

AbstractCellCycleModel *	CreateCellCycleModel ()

virtual void	OutputCellCycleModelParameters (out_stream &rParamsFile)

Public Member Functions inherited from SimpleOxygenBasedCellCycleModel
	SimpleOxygenBasedCellCycleModel ()

void	UpdateCellCyclePhase ()

void	UpdateHypoxicDuration ()

double	GetCurrentHypoxicDuration () const

double	GetCurrentHypoxiaOnsetTime () const

double	GetHypoxicConcentration () const

void	SetHypoxicConcentration (double hypoxicConcentration)

double	GetQuiescentConcentration () const

void	SetQuiescentConcentration (double quiescentConcentration)

double	GetCriticalHypoxicDuration () const

void	SetCriticalHypoxicDuration (double criticalHypoxicDuration)

void	SetCurrentHypoxiaOnsetTime (double currentHypoxiaOnsetTime)

Public Member Functions inherited from AbstractSimplePhaseBasedCellCycleModel
	AbstractSimplePhaseBasedCellCycleModel ()

virtual	~AbstractSimplePhaseBasedCellCycleModel ()

Public Member Functions inherited from AbstractPhaseBasedCellCycleModel
	AbstractPhaseBasedCellCycleModel ()

virtual	~AbstractPhaseBasedCellCycleModel ()

virtual bool	ReadyToDivide ()

CellCyclePhase	GetCurrentCellCyclePhase () const

virtual double	GetG1Duration () const

double	GetStemCellG1Duration () const

double	GetTransitCellG1Duration () const

double	GetSG2MDuration () const

virtual double	GetSDuration () const

virtual double	GetMDuration () const

virtual void	SetStemCellG1Duration (double stemCellG1Duration)

virtual void	SetTransitCellG1Duration (double transitCellG1Duration)

void	SetSDuration (double sDuration)

void	SetG2Duration (double g2Duration)

void	SetMDuration (double mDuration)

virtual double	GetAverageTransitCellCycleTime ()

virtual double	GetAverageStemCellCycleTime ()

double	GetMinimumGapDuration () const

void	SetMinimumGapDuration (double minimumGapDuration)

Public Member Functions inherited from AbstractCellCycleModel
	AbstractCellCycleModel ()

virtual	~AbstractCellCycleModel ()

void	SetCell (CellPtr pCell)

CellPtr	GetCell ()

virtual void	SetBirthTime (double birthTime)

void	SetDimension (unsigned dimension)

unsigned	GetDimension () const

double	GetBirthTime () const

double	GetAge ()

virtual bool	CanCellTerminallyDifferentiate ()

void	OutputCellCycleModelInfo (out_stream &rParamsFile)

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Protected Member Functions
	StochasticOxygenBasedCellCycleModel (const StochasticOxygenBasedCellCycleModel &rModel)

Protected Member Functions inherited from SimpleOxygenBasedCellCycleModel
	SimpleOxygenBasedCellCycleModel (const SimpleOxygenBasedCellCycleModel &rModel)

Protected Member Functions inherited from AbstractSimplePhaseBasedCellCycleModel
virtual void	SetG1Duration ()

	AbstractSimplePhaseBasedCellCycleModel (const AbstractSimplePhaseBasedCellCycleModel &rModel)

Protected Member Functions inherited from AbstractPhaseBasedCellCycleModel
	AbstractPhaseBasedCellCycleModel (const AbstractPhaseBasedCellCycleModel &rModel)

Protected Member Functions inherited from AbstractCellCycleModel
	AbstractCellCycleModel (const AbstractCellCycleModel &rModel)

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

void	GenerateStochasticG2Duration ()

Private Attributes
double	mStochasticG2Duration

Friends
class	TestSimpleCellCycleModels

class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from SimpleOxygenBasedCellCycleModel
double	mCurrentHypoxicDuration

double	mCurrentHypoxiaOnsetTime

double	mHypoxicConcentration

double	mQuiescentConcentration

double	mCriticalHypoxicDuration

Protected Attributes inherited from AbstractPhaseBasedCellCycleModel
CellCyclePhase	mCurrentCellCyclePhase

double	mG1Duration

double	mMinimumGapDuration

double	mStemCellG1Duration

double	mTransitCellG1Duration

double	mSDuration

double	mG2Duration

double	mMDuration

Protected Attributes inherited from AbstractCellCycleModel
CellPtr	mpCell

double	mBirthTime

bool	mReadyToDivide

unsigned	mDimension

Detailed Description

Stochastic oxygen-based cell-cycle model.

A simple oxygen-dependent cell-cycle model that inherits from SimpleOxygenBasedCellCycleModel and in addition spends a random duration in G2 phase.

Definition at line 49 of file StochasticOxygenBasedCellCycleModel.hpp.

Constructor & Destructor Documentation

StochasticOxygenBasedCellCycleModel::StochasticOxygenBasedCellCycleModel ( const StochasticOxygenBasedCellCycleModel & rModel )

protected

Protected copy-constructor for use by CreateCellCycleModel. The only way for external code to create a copy of a cell cycle model is by calling that method, to ensure that a model of the correct subclass is created. This copy-constructor helps subclasses to ensure that all member variables are correctly copied when this happens.

This method is called by child classes to set member variables for a daughter cell upon cell division. Note that the parent cell cycle model will have had ResetForDivision() called just before CreateCellCycleModel() is called, so performing an exact copy of the parent is suitable behaviour. Any daughter-cell-specific initialisation can be done in InitialiseDaughterCell().

Parameters

rModel the cell cycle model to copy.

Definition at line 43 of file StochasticOxygenBasedCellCycleModel.cpp.

StochasticOxygenBasedCellCycleModel::StochasticOxygenBasedCellCycleModel ( )

Constructor.

Definition at line 38 of file StochasticOxygenBasedCellCycleModel.cpp.

Referenced by CreateCellCycleModel().