#include <VertexT2SwapLocationsWriter.hpp>

Inheritance diagram for VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	VertexT2SwapLocationsWriter ()

virtual void	Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

virtual void	Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellPopulationWriter (const std::string &rFileName)

virtual void	WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellBasedWriter (const std::string &rFileName)

virtual	~AbstractCellBasedWriter ()

void	CloseFile ()

virtual void	OpenOutputFile (OutputFileHandler &rOutputFileHandler)

void	OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)

virtual void	WriteTimeStamp ()

virtual void	WriteNewline ()

void	SetFileName (std::string fileName)

std::string	GetFileName ()

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string	mFileName

out_stream	mpOutStream

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >

A writer class to output the time and locations of T2 swaps to a file.

The output file is called T2SwapLocations.dat by default.

Definition at line 49 of file VertexT2SwapLocationsWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::VertexT2SwapLocationsWriter ( )

Default constructor.

Definition at line 45 of file VertexT2SwapLocationsWriter.cpp.

Referenced by VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::serialize().

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Serialize the object and its member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 61 of file VertexT2SwapLocationsWriter.hpp.

References EXPORT_TEMPLATE_CLASS_ALL_DIMS, VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::VertexT2SwapLocationsWriter(), and VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the data.

This is an empty dummy function, since this class is defined for use with a VertexBasedCellPopulation only.

Parameters

pCellPopulation a pointer to the MeshBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 51 of file VertexT2SwapLocationsWriter.cpp.

Referenced by VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::serialize().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( CaBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the data.

This is an empty dummy function, since this class is defined for use with a VertexBasedCellPopulation only.

Parameters

pCellPopulation a pointer to the CaBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 56 of file VertexT2SwapLocationsWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( NodeBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the data.

This is an empty dummy function, since this class is defined for use with a VertexBasedCellPopulation only.

Parameters

pCellPopulation a pointer to the NodeBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 61 of file VertexT2SwapLocationsWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( PottsBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the data.

This is an empty dummy function, since this class is defined for use with a VertexBasedCellPopulation only.

Parameters

pCellPopulation a pointer to the PottsBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 66 of file VertexT2SwapLocationsWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void VertexT2SwapLocationsWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( VertexBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the VertexBasedCellPopulation and write the location of any T2 swaps at the present simulation time.

Outputs a line of tab-separated values of the form: [num T2 swaps] [T2 swap 0 x-pos] [T2 swap 0 y-pos] [T2 swap 0 z-pos] [T2 swap 1 x-pos] [T2 swap 1 y-pos] [T2 swap 1 z-pos] ...

where [num T2 swaps] denotes the number of T2 swaps at the present time, and [T2 swap 0 x-pos] denotes the x-coordinate of the T2 swap with index 0 in the MutableVertexMesh member mLocationsOfT2Swaps, and so on, with [z-pos] included for 3-dimensional simulations.

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the VertexBasedCellPopulation to visit.

Implements AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 71 of file VertexT2SwapLocationsWriter.cpp.

References VertexBasedCellPopulation< DIM >::ClearLocationsAndCellIdsOfT2Swaps(), EXPORT_TEMPLATE_CLASS_ALL_DIMS, VertexBasedCellPopulation< DIM >::GetCellIdsOfT2Swaps(), VertexBasedCellPopulation< DIM >::GetLocationsOfT2Swaps(), and AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >::mpOutStream.