Here is a list of all documented class members with links to the class documentation for each member:
- o -
- ObjectCommunicator()
: ObjectCommunicator< CLASS >
- ObsoleteBoxCollection()
: ObsoleteBoxCollection< DIM >
- OdeLinearSystemSolver()
: OdeLinearSystemSolver
- OdeSolution()
: OdeSolution
- OdeSystemForCoupledHeatEquation()
: OdeSystemForCoupledHeatEquation
- OdeSystemForCoupledHeatEquationWithSource()
: OdeSystemForCoupledHeatEquationWithSource
- OdeSystemInformation()
: OdeSystemInformation< ODE_SYSTEM >
- OdeTimeStep
: AbstractUntemplatedConvergenceTester
- OffLatticeSimulation()
: OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
- OnEndOfTimestep()
: AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
, BidomainProblem< DIM >
- OnEndOfTimeStep()
: CardiacElectroMechanicsProblem< DIM, ELEC_PROB_DIM >
- OnLatticeSimulation()
: OnLatticeSimulation< DIM >
- OpenCableElementsFile()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- OpenElementFile()
: MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
- OpenElementFiles()
: CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
- OpenElementsFile()
: PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- OpenFaceFile()
: MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
- OpenFacesFile()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- OpenFile()
: Hdf5DataWriter
- OpenFileAndWriteHeader()
: FibreWriter< DIM >
- OpenFiles()
: GmshMeshReader< ELEMENT_DIM, SPACE_DIM >
, PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- OpenNclFile()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
- OpenNodeFile()
: CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
, MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
, PottsMeshReader< SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- OpenOutputFile()
: AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
, OutputFileHandler
- OpenOutputFileForAppend()
: AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
- OpenRoundRobinWritersFilesForAppend()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- OpenWritersFiles()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, CaBasedCellPopulation< DIM >
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, MeshBasedCellPopulationWithGhostNodes< DIM >
, PottsBasedCellPopulation< DIM >
, VertexBasedCellPopulation< SPACE_DIM >
- operator!=()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
, boost::random::gamma_distribution_v165< RealType >
, boost::random::gamma_distribution_v165< RealType >::param_type
, DistributedVector::Iterator
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
, Node< SPACE_DIM >::ContainingBoundaryElementIterator
, Node< SPACE_DIM >::ContainingElementIterator
, PottsMesh< DIM >::PottsElementIterator
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
, VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
- operator()()
: boost::random::exponential_distribution_v165< RealType >
, boost::random::gamma_distribution_v165< RealType >
, boost::random::normal_distribution_v165< RealType >
, FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
, LessThanNode< SPACE_DIM >
, null_deleter
- operator*()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
, Node< SPACE_DIM >::ContainingBoundaryElementIterator
, Node< SPACE_DIM >::ContainingElementIterator
, PottsMesh< DIM >::PottsElementIterator
, VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
- operator++()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
, DistributedVector::Iterator
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >::SpringIterator
, Node< SPACE_DIM >::ContainingBoundaryElementIterator
, Node< SPACE_DIM >::ContainingElementIterator
, PottsMesh< DIM >::PottsElementIterator
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
, VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
- operator->()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::Iterator
, AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
, PottsMesh< DIM >::PottsElementIterator
, VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
- operator<()
: FileFinder
- operator<<
: boost::random::gamma_distribution_v165< RealType >
, boost::random::gamma_distribution_v165< RealType >::param_type
, LogFile
- operator=()
: AbstractCellCycleModel
, AbstractSrnModel
, CardiacNewtonSolver< SIZE, CELLTYPE >
, CellCycleModelOdeHandler
, CellPropertyRegistry
, CombinedOdeSystemInformation
, HeartRegionCode
, OdeSystemInformation< ODE_SYSTEM >
- operator==
: boost::random::gamma_distribution_v165< RealType >
, boost::random::gamma_distribution_v165< RealType >::param_type
, Node< SPACE_DIM >::ContainingBoundaryElementIterator
, Node< SPACE_DIM >::ContainingElementIterator
- operator>>
: boost::random::gamma_distribution_v165< RealType >
, boost::random::gamma_distribution_v165< RealType >::param_type
- operator[]()
: AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
, ChastePoint< DIM >
, ChastePoint< 0 >
, DistributedVector::Chunk
, DistributedVector
, DistributedVector::Stripe
, ReplicatableVector
- OperatorSplittingMonodomainSolver()
: OperatorSplittingMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
- OptionExists()
: CommandLineArguments
- Orientations
: PottsElementData
, VertexElementData
- OutputAdditionalSimulationSetup()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
, OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
, OnLatticeSimulation< DIM >
- OutputCellCaBasedDivisionRuleInfo()
: AbstractCaBasedDivisionRule< DIM >
- OutputCellCaBasedDivisionRuleParameters()
: AbstractCaBasedDivisionRule< DIM >
- OutputCellCentreBasedDivisionRuleInfo()
: AbstractCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM >
- OutputCellCentreBasedDivisionRuleParameters()
: AbstractCentreBasedDivisionRule< ELEMENT_DIM, SPACE_DIM >
- OutputCellCycleModelInfo()
: AbstractCellCycleModel
- OutputCellCycleModelParameters()
: AbstractCellCycleModel
, AbstractOdeBasedCellCycleModel
, AbstractOdeBasedPhaseBasedCellCycleModel
, AbstractPhaseBasedCellCycleModel
, AbstractSimpleCellCycleModel
, AbstractSimpleGenerationalCellCycleModel
, AbstractSimplePhaseBasedCellCycleModel
, AbstractVanLeeuwen2009WntSwatCellCycleModel
, AbstractWntOdeBasedCellCycleModel
, Alarcon2004OxygenBasedCellCycleModel
, BernoulliTrialCellCycleModel
, ContactInhibitionCellCycleModel
, ExponentialG1GenerationalCellCycleModel
, FixedG1GenerationalCellCycleModel
, FixedSequenceCellCycleModel
, GammaG1CellCycleModel
, NoCellCycleModel
, SimpleOxygenBasedCellCycleModel
, SimpleWntCellCycleModel
, SingleOdeWntCellCycleModel
, StochasticOxygenBasedCellCycleModel
, StochasticWntCellCycleModel
, TysonNovakCellCycleModel
, UniformCellCycleModel
, UniformG1GenerationalCellCycleModel
, VanLeeuwen2009WntSwatCellCycleModelHypothesisOne
, VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo
, WntCellCycleModel
- OutputCellKillerInfo()
: AbstractCellKiller< SPACE_DIM >
- OutputCellKillerParameters()
: AbstractCellKiller< SPACE_DIM >
, ApoptoticCellKiller< SPACE_DIM >
, IsolatedLabelledCellKiller< DIM >
, PlaneBasedCellKiller< DIM >
, RadialSloughingCellKiller
, RandomCellKiller< DIM >
, SloughingCellKiller< DIM >
, T2SwapCellKiller< DIM >
, TargetedCellKiller< DIM >
- OutputCellPopulationBoundaryConditionInfo()
: AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
- OutputCellPopulationBoundaryConditionParameters()
: AbstractCellPopulationBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
, CryptSimulationBoundaryCondition< DIM >
, PlaneBoundaryCondition< ELEMENT_DIM, SPACE_DIM >
, SphereGeometryBoundaryCondition< DIM >
- OutputCellPopulationInfo()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
- OutputCellPopulationParameters()
: AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractCentreBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
, AbstractOnLatticeCellPopulation< DIM >
, CaBasedCellPopulation< DIM >
, MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM >
, MeshBasedCellPopulationWithGhostNodes< DIM >
, NodeBasedCellPopulation< DIM >
, NodeBasedCellPopulationWithBuskeUpdate< DIM >
, NodeBasedCellPopulationWithParticles< DIM >
, PottsBasedCellPopulation< DIM >
, VertexBasedCellPopulation< SPACE_DIM >
- OutputCellVertexBasedDivisionRuleInfo()
: AbstractVertexBasedDivisionRule< SPACE_DIM >
- OutputCellVertexBasedDivisionRuleParameters()
: AbstractVertexBasedDivisionRule< SPACE_DIM >
- OutputDirectoryFifoQueue()
: OutputDirectoryFifoQueue
- OutputFileHandler()
: OutputFileHandler
- OutputForceInfo()
: AbstractForce< ELEMENT_DIM, SPACE_DIM >
- OutputForceParameters()
: AbstractForce< ELEMENT_DIM, SPACE_DIM >
, AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >
, BuskeAdhesiveForce< DIM >
, BuskeCompressionForce< DIM >
, BuskeElasticForce< DIM >
, ChemotacticForce< DIM >
, CryptProjectionForce
, DifferentialAdhesionGeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
, DiffusionForce< DIM >
, FarhadifarForce< DIM >
, GeneralisedLinearSpringForce< ELEMENT_DIM, SPACE_DIM >
, LinearSpringWithVariableSpringConstantsForce< DIM >
, NagaiHondaDifferentialAdhesionForce< DIM >
, NagaiHondaForce< DIM >
, PopulationTestingForce< ELEMENT_DIM, SPACE_DIM >
, RepulsionForce< DIM >
, VertexCryptBoundaryForce< DIM >
, WelikyOsterForce< DIM >
- OutputMeshAsVtkUnstructuredGrid()
: VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
- OutputNumericalMethodInfo()
: AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
- OutputNumericalMethodParameters()
: AbstractNumericalMethod< ELEMENT_DIM, SPACE_DIM >
, ForwardEulerNumericalMethod< ELEMENT_DIM, SPACE_DIM >
- OutputSimulationModifierInfo()
: AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >
- OutputSimulationModifierParameters()
: AbstractBoxDomainPdeModifier< DIM >
, AbstractCellBasedSimulationModifier< ELEMENT_DIM, SPACE_DIM >
, AbstractGrowingDomainPdeModifier< DIM >
, AbstractPdeModifier< DIM >
, AbstractTargetAreaModifier< DIM >
, DeltaNotchTrackingModifier< DIM >
, EllipticBoxDomainPdeModifier< DIM >
, EllipticGrowingDomainPdeModifier< DIM >
, ParabolicBoxDomainPdeModifier< DIM >
, ParabolicGrowingDomainPdeModifier< DIM >
, SimpleTargetAreaModifier< DIM >
, TargetAreaLinearGrowthModifier< DIM >
, VolumeTrackingModifier< DIM >
- OutputSimulationParameters()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
, CryptSimulation1d
, CryptSimulation2d
, OffLatticeSimulation< ELEMENT_DIM, SPACE_DIM >
, OnLatticeSimulation< DIM >
- OutputSimulationSetup()
: AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM >
- OutputSrnModelInfo()
: AbstractSrnModel
- OutputSrnModelParameters()
: AbstractOdeSrnModel
, AbstractSrnModel
, DeltaNotchSrnModel
, Goldbeter1991SrnModel
- OutputUpdateRuleInfo()
: AbstractUpdateRule< DIM >
- OutputUpdateRuleParameters()
: AbstractCaSwitchingUpdateRule< DIM >
, AbstractCaUpdateRule< DIM >
, AbstractPottsUpdateRule< DIM >
, AbstractUpdateRule< DIM >
, AdhesionPottsUpdateRule< DIM >
, ChemotaxisPottsUpdateRule< DIM >
, DifferentialAdhesionPottsUpdateRule< DIM >
, DiffusionCaUpdateRule< DIM >
, RandomCaSwitchingUpdateRule< DIM >
, SurfaceAreaConstraintPottsUpdateRule< DIM >
, VolumeConstraintPottsUpdateRule< DIM >