, including all inherited members.
AbstractBidomainSolver(bool bathSimulation, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BidomainTissue< SPACE_DIM > *pTissue, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *pBoundaryConditions, unsigned numQuadPoints=2) | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline] |
AbstractDynamicLinearPdeSolver(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
AbstractLinearPdeSolver(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh) | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline] |
CheckCompatibilityCondition() | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
FinaliseForBath(bool computeMatrix, bool computeVector) | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline, protected] |
FinaliseLinearSystem(Vec existingSolution) | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
FollowingSolveLinearSystem(Vec currentSolution) | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline, virtual] |
GenerateNullBasis() const | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
GetBoundaryConditions() | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline] |
GetLinearSystem() | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline] |
InitialiseForSolve(Vec initialSolution) | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
InitialiseHdf5Writer() | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mBathSimulation | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [protected] |
mFilenamePrefix | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mFixedExtracellularPotentialNodes | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [protected] |
mIdealTimeStep | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mInitialCondition | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mLastWorkingTimeStep | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mMatrixIsAssembled | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mMatrixIsConstant | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mNullSpaceCreated | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [protected] |
mNumQuadPoints | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [protected] |
mOutputDirectory | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mOutputToParallelVtk | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mOutputToTxt | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mOutputToVtk | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mpBidomainTissue | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [protected] |
mpBoundaryConditions | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [protected] |
mpConfig | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [protected] |
mpHdf5Writer | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mpLinearSystem | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [protected] |
mpMesh | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [protected] |
mPrintingTimestepMultiple | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mpTimeAdaptivityController | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mRowForAverageOfPhiZeroed | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [protected] |
mTend | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mTimesSet | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mTstart | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
mVariableColumnIds | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
PrepareForSetupLinearSystem(Vec existingSolution) | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline, protected, virtual] |
ResetBoundaryConditionsContainer(BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *pBcc) | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline] |
SetFixedExtracellularPotentialNodes(std::vector< unsigned > fixedExtracellularPotentialNodes) | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline] |
SetInitialCondition(Vec initialCondition) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetMatrixIsNotAssembled() | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetOutputDirectoryAndPrefix(std::string outputDirectory, std::string prefix) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetOutputToParallelVtk(bool output) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetOutputToTxt(bool output) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetOutputToVtk(bool output) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetPrintingTimestepMultiple(unsigned multiple) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetRowForAverageOfPhiZeroed(unsigned rowMeanPhiEZero) | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline] |
SetTimeAdaptivityController(AbstractTimeAdaptivityController *pTimeAdaptivityController) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetTimes(double tStart, double tEnd) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetTimeStep(double dt) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
SetupLinearSystem(Vec currentSolution, bool computeMatrix)=0 | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [pure virtual] |
Solve() | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | |
WriteOneStep(double time, Vec solution) | AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 > | [protected] |
~AbstractBidomainSolver() | AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM > | [inline, virtual] |
~AbstractLinearPdeSolver() | AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > | [inline, virtual] |