, including all inherited members.
| AbstractCellPopulation() | AbstractCellPopulation< DIM > | [inline, protected] |
| AbstractCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< DIM > | [inline] |
| AbstractOnLatticeCellPopulation() | AbstractOnLatticeCellPopulation< DIM > | [inline, protected] |
| AbstractOnLatticeCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| AddUpdateRule(boost::shared_ptr< AbstractCaUpdateRule< DIM > > pUpdateRule) | CaBasedCellPopulation< DIM > | [inline] |
| Begin() | AbstractCellPopulation< DIM > | [inline] |
| boost::serialization::access class | CaBasedCellPopulation< DIM > | [friend] |
| CaBasedCellPopulation(TetrahedralMesh< DIM, DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false, bool validate=true) | CaBasedCellPopulation< DIM > | [inline] |
| CaBasedCellPopulation(TetrahedralMesh< DIM, DIM > &rMesh) | CaBasedCellPopulation< DIM > | [inline] |
| CloseOutputFiles() | AbstractCellPopulation< DIM > | [inline, virtual] |
| CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory) | AbstractCellPopulation< DIM > | [inline, virtual] |
| End() | AbstractCellPopulation< DIM > | [inline] |
| GenerateCellResults(unsigned locationIndex, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GenerateCellResultsAndWriteToFiles() | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetCellAncestors() | AbstractCellPopulation< DIM > | [inline] |
| GetCellMutationStateCount() | AbstractCellPopulation< DIM > | [inline] |
| GetCellPropertyRegistry() | AbstractCellPopulation< DIM > | [inline] |
| GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | [inline] |
| GetCentroidOfCellPopulation() | AbstractCellPopulation< DIM > | [inline] |
| GetEmptySiteIndices() | CaBasedCellPopulation< DIM > | [inline] |
| GetFreeNeighbouringNodeIndices(unsigned nodeIndex) | CaBasedCellPopulation< DIM > | [inline] |
| GetIdentifier() const | Identifiable | |
| GetIterateRandomlyOverUpdateRuleCollection() | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< DIM > | [inline] |
| GetLocationOfCellCentre(CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetMaximumDegreeInEachDirection(unsigned nodeIndex) | CaBasedCellPopulation< DIM > | [inline] |
| GetNeighbouringNodeIndices(unsigned index) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetNeighbouringNodeIndicesVector(unsigned nodeIndex) | CaBasedCellPopulation< DIM > | [inline] |
| GetNode(unsigned index) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetNthDegreeNeighbouringNodeIndices(unsigned nodeIndex, unsigned degree) | CaBasedCellPopulation< DIM > | [inline] |
| GetNumNodes() | CaBasedCellPopulation< DIM > | [inline, virtual] |
| GetNumRealCells() | AbstractCellPopulation< DIM > | [inline] |
| GetOnlyUseNearestNeighboursForDivision() | CaBasedCellPopulation< DIM > | [inline] |
| GetOutputCellAges() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellAncestors() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellCyclePhases() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellIdData() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellMutationStates() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellProliferativeTypes() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellVariables() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellVolumes() | AbstractCellPopulation< DIM > | [inline] |
| GetSizeOfCellPopulation() | AbstractCellPopulation< DIM > | [inline] |
| GetUpdateNodesInRandomOrder() | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| GetUseVonNeumannNeighbourhoods() | CaBasedCellPopulation< DIM > | [inline] |
| GetWidth(const unsigned &rDimension) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| InitialiseCells() | AbstractCellPopulation< DIM > | [inline] |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| IsEmptySite(unsigned index) | CaBasedCellPopulation< DIM > | [inline] |
| mCellCyclePhaseCount | AbstractCellPopulation< DIM > | [protected] |
| mCellLocationMap | AbstractCellPopulation< DIM > | [protected] |
| mCellProliferativeTypeCount | AbstractCellPopulation< DIM > | [protected] |
| mCells | AbstractCellPopulation< DIM > | [protected] |
| mCentroid | AbstractCellPopulation< DIM > | [protected] |
| mDeleteMesh | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mDirPath | AbstractCellPopulation< DIM > | [protected] |
| mIsEmptySite | CaBasedCellPopulation< DIM > | [private] |
| mIterateRandomlyOverUpdateRuleCollection | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mLocationCellMap | AbstractCellPopulation< DIM > | [protected] |
| mOnlyUseNearestNeighboursForDivision | CaBasedCellPopulation< DIM > | [private] |
| mOutputCellAges | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellAncestors | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellCyclePhases | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellIdData | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellMutationStates | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellProliferativeTypes | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVariables | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVolumes | AbstractCellPopulation< DIM > | [protected] |
| MoveCell(CellPtr pCell, unsigned newLocationIndex) | CaBasedCellPopulation< DIM > | [inline] |
| mpCellAgesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellCyclePhasesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellIdFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellMutationStatesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellPropertyRegistry | AbstractCellPopulation< DIM > | [protected] |
| mpCellVariablesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellVolumesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizBoundaryNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellAncestorsFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellProliferativePhasesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVtkMetaFile | AbstractCellPopulation< DIM > | [protected] |
| mrMesh | CaBasedCellPopulation< DIM > | [private] |
| mUpdateNodesInRandomOrder | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mUpdateRuleCollection | CaBasedCellPopulation< DIM > | [private] |
| mUseVonNeumannNeighbourhoods | CaBasedCellPopulation< DIM > | [private] |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< DIM > | [inline] |
| OutputCellPopulationParameters(out_stream &rParamsFile) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| RemoveDeadCells() | CaBasedCellPopulation< DIM > | [inline, virtual] |
| rGetCellCyclePhaseCount() const | AbstractCellPopulation< DIM > | [inline] |
| rGetCellProliferativeTypeCount() const | AbstractCellPopulation< DIM > | [inline] |
| rGetCells() | AbstractCellPopulation< DIM > | [inline] |
| rGetEmptySites() | CaBasedCellPopulation< DIM > | [inline] |
| rGetMesh() | CaBasedCellPopulation< DIM > | [inline] |
| rGetMesh() const | CaBasedCellPopulation< DIM > | [inline] |
| rGetUpdateRuleCollection() const | CaBasedCellPopulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | CaBasedCellPopulation< DIM > | [inline, private] |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< DIM > | [inline] |
| SetDefaultMutationStateOrdering() | AbstractCellPopulation< DIM > | [inline] |
| SetEmptySites(const std::set< unsigned > &rEmptySiteIndices) | CaBasedCellPopulation< DIM > | [inline, private] |
| SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| SetNode(unsigned index, ChastePoint< DIM > &rNewLocation) | AbstractOnLatticeCellPopulation< DIM > | [inline, virtual] |
| SetOnlyUseNearestNeighboursForDivision(bool onlyUseNearestNeighboursForDivision) | CaBasedCellPopulation< DIM > | [inline] |
| SetOutputCellAges(bool outputCellAges) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellAncestors(bool outputCellAncestors) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellCyclePhases(bool outputCellCyclePhases) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellIdData(bool outputCellIdData) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellMutationStates(bool outputCellMutationStates) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellVariables(bool outputCellVariables) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellVolumes(bool outputCellVolumes) | AbstractCellPopulation< DIM > | [inline] |
| SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| SetUseVonNeumannNeighbourhoods(bool useVonNeumannNeighbourhoods) | CaBasedCellPopulation< DIM > | [inline] |
| TestCaBasedCellPopulation (defined in CaBasedCellPopulation< DIM >) | CaBasedCellPopulation< DIM > | [friend] |
| Update(bool hasHadBirthsOrDeaths=true) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| UpdateCellLocations(double dt) | CaBasedCellPopulation< DIM > | [inline, virtual] |
| Validate() | CaBasedCellPopulation< DIM > | [inline, private, virtual] |
| WriteCellIdDataToFile() | AbstractCellPopulation< DIM > | [inline] |
| WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< DIM > | [inline] |
| WriteCellVolumeResultsToFile() | CaBasedCellPopulation< DIM > | [inline, virtual] |
| WriteResultsToFiles() | AbstractCellPopulation< DIM > | [inline, virtual] |
| WriteTimeAndNodeResultsToFiles() | AbstractCellPopulation< DIM > | [inline, virtual] |
| WriteVtkResultsToFile() | CaBasedCellPopulation< DIM > | [inline, private, virtual] |
| ~AbstractCellPopulation() | AbstractCellPopulation< DIM > | [inline, virtual] |
| ~AbstractOnLatticeCellPopulation() | AbstractOnLatticeCellPopulation< DIM > | [inline, virtual] |
| ~CaBasedCellPopulation() | CaBasedCellPopulation< DIM > | [inline] |
| ~Identifiable() | Identifiable | [virtual] |
