, including all inherited members.
| AbstractCellBasedSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | AbstractCellBasedSimulation< DIM > | [inline] |
| AddCellKiller(boost::shared_ptr< AbstractCellKiller< DIM > > pCellKiller) | AbstractCellBasedSimulation< DIM > | [inline] |
| AddCellPopulationBoundaryCondition(boost::shared_ptr< AbstractCellPopulationBoundaryCondition< DIM > > pBoundaryCondition) | OffLatticeSimulation< 2 > | |
| AddForce(boost::shared_ptr< AbstractForce< DIM > > pForce) | OffLatticeSimulation< 2 > | |
| AfterSolve() | CryptSimulation2d | [protected, virtual] |
| boost::serialization::access class | CryptSimulation2d | [friend] |
| CalculateCellDivisionVector(CellPtr pParentCell) | CryptSimulation2d | [protected, virtual] |
| CryptSimulation2d(AbstractCellPopulation< 2 > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | CryptSimulation2d | |
| DoCellBirth() | AbstractCellBasedSimulation< DIM > | [inline, protected, virtual] |
| DoCellRemoval() | AbstractCellBasedSimulation< DIM > | [inline, protected] |
| GetCellBasedPdeHandler() | AbstractCellBasedSimulation< DIM > | [inline] |
| GetDt() | AbstractCellBasedSimulation< DIM > | [inline] |
| GetIdentifier() const | Identifiable | |
| GetNodeLocation(const unsigned &rNodeIndex) | AbstractCellBasedSimulation< DIM > | [inline] |
| GetNumBirths() | AbstractCellBasedSimulation< DIM > | [inline] |
| GetNumDeaths() | AbstractCellBasedSimulation< DIM > | [inline] |
| GetOutputDirectory() | AbstractCellBasedSimulation< DIM > | [inline] |
| GetOutputNodeVelocities() | OffLatticeSimulation< 2 > | |
| mBoundaryConditions | OffLatticeSimulation< 2 > | [protected] |
| mCellKillers | AbstractCellBasedSimulation< DIM > | [protected] |
| mDeleteCellPopulationInDestructor | AbstractCellBasedSimulation< DIM > | [protected] |
| mDt | AbstractCellBasedSimulation< DIM > | [protected] |
| mEndTime | AbstractCellBasedSimulation< DIM > | [protected] |
| mForceCollection | OffLatticeSimulation< 2 > | [protected] |
| mInitialiseCells | AbstractCellBasedSimulation< DIM > | [protected] |
| mNoBirth | AbstractCellBasedSimulation< DIM > | [protected] |
| mNumBirths | AbstractCellBasedSimulation< DIM > | [protected] |
| mNumDeaths | AbstractCellBasedSimulation< DIM > | [protected] |
| mOutputDirectory | AbstractCellBasedSimulation< DIM > | [protected] |
| mOutputNodeVelocities | OffLatticeSimulation< 2 > | [protected] |
| mpCellBasedPdeHandler | AbstractCellBasedSimulation< DIM > | [protected] |
| mpNodeVelocitiesFile | OffLatticeSimulation< 2 > | [protected] |
| mpVizSetupFile | AbstractCellBasedSimulation< DIM > | [protected] |
| mrCellPopulation | AbstractCellBasedSimulation< DIM > | [protected] |
| mSamplingTimestepMultiple | AbstractCellBasedSimulation< DIM > | [protected] |
| mSimulationOutputDirectory | AbstractCellBasedSimulation< DIM > | [protected] |
| mUpdateCellPopulation | AbstractCellBasedSimulation< DIM > | [protected] |
| mUsingMeshBasedCellPopulation | CryptSimulation2d | [protected] |
| mVizBetaCateninResultsFile | CryptSimulation2d | [protected] |
| mWriteBetaCatenin | CryptSimulation2d | [protected] |
| OffLatticeSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true) | OffLatticeSimulation< 2 > | |
| OutputAdditionalSimulationSetup(out_stream &rParamsFile) | OffLatticeSimulation< 2 > | [virtual] |
| OutputSimulationParameters(out_stream &rParamsFile) | CryptSimulation2d | [virtual] |
| OutputSimulationSetup() | AbstractCellBasedSimulation< DIM > | [inline, protected] |
| PostSolve() | CryptSimulation2d | [protected, virtual] |
| rGetCellPopulation() | AbstractCellBasedSimulation< DIM > | [inline] |
| rGetCellPopulation() const | AbstractCellBasedSimulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | CryptSimulation2d | [inline, protected] |
| SetBottomCellAncestors() | CryptSimulation2d | |
| SetCellBasedPdeHandler(CellBasedPdeHandler< DIM > *pCellBasedPdeHandler) | AbstractCellBasedSimulation< DIM > | [inline] |
| SetDt(double dt) | AbstractCellBasedSimulation< DIM > | [inline] |
| SetEndTime(double endTime) | AbstractCellBasedSimulation< DIM > | [inline] |
| SetNoBirth(bool noBirth) | AbstractCellBasedSimulation< DIM > | [inline] |
| SetOutputDirectory(std::string outputDirectory) | AbstractCellBasedSimulation< DIM > | [inline] |
| SetOutputNodeVelocities(bool outputNodeVelocities) | OffLatticeSimulation< 2 > | |
| SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple) | AbstractCellBasedSimulation< DIM > | [inline] |
| SetUpdateCellPopulationRule(bool updateCellPopulation) | AbstractCellBasedSimulation< DIM > | [inline] |
| SetupSolve() | CryptSimulation2d | [protected, virtual] |
| SetupWriteBetaCatenin() | CryptSimulation2d | [protected] |
| Solve() | AbstractCellBasedSimulation< DIM > | [inline] |
| StoppingEventHasOccurred() | AbstractCellBasedSimulation< DIM > | [inline, protected, virtual] |
| TestCryptSimulation2dWithMeshBasedCellPopulation (defined in CryptSimulation2d) | CryptSimulation2d | [friend] |
| TestCryptSimulation2dWithVertexBasedCellPopulation (defined in CryptSimulation2d) | CryptSimulation2d | [friend] |
| UpdateCellLocationsAndTopology() | OffLatticeSimulation< 2 > | [protected, virtual] |
| UpdateCellPopulation() | AbstractCellBasedSimulation< DIM > | [inline, protected, virtual] |
| UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces) | OffLatticeSimulation< 2 > | [protected, virtual] |
| UseJiggledBottomCells() | CryptSimulation2d | |
| WriteBetaCatenin(double time) | CryptSimulation2d | [protected, virtual] |
| WriteVisualizerSetupFile() | OffLatticeSimulation< 2 > | [protected, virtual] |
| ~AbstractCellBasedSimulation() | AbstractCellBasedSimulation< DIM > | [inline, virtual] |
| ~CryptSimulation2d() | CryptSimulation2d | [virtual] |
| ~Identifiable() | Identifiable | [virtual] |
