CryptSimulation2d Member List

This is the complete list of members for CryptSimulation2d, including all inherited members.
AbstractCellBasedSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)AbstractCellBasedSimulation< DIM > [inline]
AddCellKiller(boost::shared_ptr< AbstractCellKiller< DIM > > pCellKiller)AbstractCellBasedSimulation< DIM > [inline]
AddCellPopulationBoundaryCondition(boost::shared_ptr< AbstractCellPopulationBoundaryCondition< DIM > > pBoundaryCondition)OffLatticeSimulation< 2 >
AddForce(boost::shared_ptr< AbstractForce< DIM > > pForce)OffLatticeSimulation< 2 >
AfterSolve()CryptSimulation2d [protected, virtual]
boost::serialization::access classCryptSimulation2d [friend]
CalculateCellDivisionVector(CellPtr pParentCell)CryptSimulation2d [protected, virtual]
CryptSimulation2d(AbstractCellPopulation< 2 > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)CryptSimulation2d
DoCellBirth()AbstractCellBasedSimulation< DIM > [inline, protected, virtual]
DoCellRemoval()AbstractCellBasedSimulation< DIM > [inline, protected]
GetCellBasedPdeHandler()AbstractCellBasedSimulation< DIM > [inline]
GetDt()AbstractCellBasedSimulation< DIM > [inline]
GetIdentifier() const Identifiable
GetNodeLocation(const unsigned &rNodeIndex)AbstractCellBasedSimulation< DIM > [inline]
GetNumBirths()AbstractCellBasedSimulation< DIM > [inline]
GetNumDeaths()AbstractCellBasedSimulation< DIM > [inline]
GetOutputDirectory()AbstractCellBasedSimulation< DIM > [inline]
GetOutputNodeVelocities()OffLatticeSimulation< 2 >
mBoundaryConditionsOffLatticeSimulation< 2 > [protected]
mCellKillersAbstractCellBasedSimulation< DIM > [protected]
mDeleteCellPopulationInDestructorAbstractCellBasedSimulation< DIM > [protected]
mDtAbstractCellBasedSimulation< DIM > [protected]
mEndTimeAbstractCellBasedSimulation< DIM > [protected]
mForceCollectionOffLatticeSimulation< 2 > [protected]
mInitialiseCellsAbstractCellBasedSimulation< DIM > [protected]
mNoBirthAbstractCellBasedSimulation< DIM > [protected]
mNumBirthsAbstractCellBasedSimulation< DIM > [protected]
mNumDeathsAbstractCellBasedSimulation< DIM > [protected]
mOutputDirectoryAbstractCellBasedSimulation< DIM > [protected]
mOutputNodeVelocitiesOffLatticeSimulation< 2 > [protected]
mpCellBasedPdeHandlerAbstractCellBasedSimulation< DIM > [protected]
mpNodeVelocitiesFileOffLatticeSimulation< 2 > [protected]
mpVizSetupFileAbstractCellBasedSimulation< DIM > [protected]
mrCellPopulationAbstractCellBasedSimulation< DIM > [protected]
mSamplingTimestepMultipleAbstractCellBasedSimulation< DIM > [protected]
mSimulationOutputDirectoryAbstractCellBasedSimulation< DIM > [protected]
mUpdateCellPopulationAbstractCellBasedSimulation< DIM > [protected]
mUsingMeshBasedCellPopulationCryptSimulation2d [protected]
mVizBetaCateninResultsFileCryptSimulation2d [protected]
mWriteBetaCateninCryptSimulation2d [protected]
OffLatticeSimulation(AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)OffLatticeSimulation< 2 >
OutputAdditionalSimulationSetup(out_stream &rParamsFile)OffLatticeSimulation< 2 > [virtual]
OutputSimulationParameters(out_stream &rParamsFile)CryptSimulation2d [virtual]
OutputSimulationSetup()AbstractCellBasedSimulation< DIM > [inline, protected]
PostSolve()CryptSimulation2d [protected, virtual]
rGetCellPopulation()AbstractCellBasedSimulation< DIM > [inline]
rGetCellPopulation() const AbstractCellBasedSimulation< DIM > [inline]
serialize(Archive &archive, const unsigned int version)CryptSimulation2d [inline, protected]
SetBottomCellAncestors()CryptSimulation2d
SetCellBasedPdeHandler(CellBasedPdeHandler< DIM > *pCellBasedPdeHandler)AbstractCellBasedSimulation< DIM > [inline]
SetDt(double dt)AbstractCellBasedSimulation< DIM > [inline]
SetEndTime(double endTime)AbstractCellBasedSimulation< DIM > [inline]
SetNoBirth(bool noBirth)AbstractCellBasedSimulation< DIM > [inline]
SetOutputDirectory(std::string outputDirectory)AbstractCellBasedSimulation< DIM > [inline]
SetOutputNodeVelocities(bool outputNodeVelocities)OffLatticeSimulation< 2 >
SetSamplingTimestepMultiple(unsigned samplingTimestepMultiple)AbstractCellBasedSimulation< DIM > [inline]
SetUpdateCellPopulationRule(bool updateCellPopulation)AbstractCellBasedSimulation< DIM > [inline]
SetupSolve()CryptSimulation2d [protected, virtual]
SetupWriteBetaCatenin()CryptSimulation2d [protected]
Solve()AbstractCellBasedSimulation< DIM > [inline]
StoppingEventHasOccurred()AbstractCellBasedSimulation< DIM > [inline, protected, virtual]
TestCryptSimulation2dWithMeshBasedCellPopulation (defined in CryptSimulation2d)CryptSimulation2d [friend]
TestCryptSimulation2dWithVertexBasedCellPopulation (defined in CryptSimulation2d)CryptSimulation2d [friend]
UpdateCellLocationsAndTopology()OffLatticeSimulation< 2 > [protected, virtual]
UpdateCellPopulation()AbstractCellBasedSimulation< DIM > [inline, protected, virtual]
UpdateNodePositions(const std::vector< c_vector< double, DIM > > &rNodeForces)OffLatticeSimulation< 2 > [protected, virtual]
UseJiggledBottomCells()CryptSimulation2d
WriteBetaCatenin(double time)CryptSimulation2d [protected, virtual]
WriteVisualizerSetupFile()OffLatticeSimulation< 2 > [protected, virtual]
~AbstractCellBasedSimulation()AbstractCellBasedSimulation< DIM > [inline, virtual]
~CryptSimulation2d()CryptSimulation2d [virtual]
~Identifiable()Identifiable [virtual]
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