, including all inherited members.
| AbstractCellPopulation() | AbstractCellPopulation< DIM > | [inline, protected] |
| AbstractCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | AbstractCellPopulation< DIM > | [inline] |
| AbstractOnLatticeCellPopulation() | AbstractOnLatticeCellPopulation< DIM > | [inline, protected] |
| AbstractOnLatticeCellPopulation(std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), bool deleteMesh=false) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| AddCell(CellPtr pNewCell, const c_vector< double, DIM > &rCellDivisionVector, CellPtr pParentCell=CellPtr()) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| AddUpdateRule(boost::shared_ptr< AbstractPottsUpdateRule< DIM > > pUpdateRule) | PottsBasedCellPopulation< DIM > | [inline] |
| Begin() | AbstractCellPopulation< DIM > | [inline] |
| boost::serialization::access class | PottsBasedCellPopulation< DIM > | [friend] |
| CloseOutputFiles() | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| CreateElementTessellation() | PottsBasedCellPopulation< DIM > | [inline] |
| CreateOutputFiles(const std::string &rDirectory, bool cleanOutputDirectory) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| End() | AbstractCellPopulation< DIM > | [inline] |
| GenerateCellResults(unsigned locationIndex, std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< DIM > | [inline, virtual] |
| GenerateCellResultsAndWriteToFiles() | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| GetCellAncestors() | AbstractCellPopulation< DIM > | [inline] |
| GetCellMutationStateCount() | AbstractCellPopulation< DIM > | [inline] |
| GetCellPropertyRegistry() | AbstractCellPopulation< DIM > | [inline] |
| GetCellUsingLocationIndex(unsigned index) | AbstractCellPopulation< DIM > | [inline] |
| GetCentroidOfCellPopulation() | AbstractCellPopulation< DIM > | [inline] |
| GetElement(unsigned elementIndex) | PottsBasedCellPopulation< DIM > | [inline] |
| GetElementCorrespondingToCell(CellPtr pCell) | PottsBasedCellPopulation< DIM > | [inline] |
| GetElementTessellation() | PottsBasedCellPopulation< DIM > | [inline] |
| GetIdentifier() const | Identifiable | |
| GetIterateRandomlyOverUpdateRuleCollection() | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| GetLocationIndexUsingCell(CellPtr pCell) | AbstractCellPopulation< DIM > | [inline] |
| GetLocationOfCellCentre(CellPtr pCell) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| GetNeighbouringNodeIndices(unsigned index) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| GetNode(unsigned index) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| GetNumElements() | PottsBasedCellPopulation< DIM > | [inline] |
| GetNumNodes() | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| GetNumRealCells() | AbstractCellPopulation< DIM > | [inline] |
| GetNumSweepsPerTimestep() | PottsBasedCellPopulation< DIM > | [inline] |
| GetOutputCellAges() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellAncestors() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellCyclePhases() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellIdData() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellMutationStates() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellProliferativeTypes() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellVariables() | AbstractCellPopulation< DIM > | [inline] |
| GetOutputCellVolumes() | AbstractCellPopulation< DIM > | [inline] |
| GetSizeOfCellPopulation() | AbstractCellPopulation< DIM > | [inline] |
| GetTemperature() | PottsBasedCellPopulation< DIM > | [inline] |
| GetUpdateNodesInRandomOrder() | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| GetWidth(const unsigned &rDimension) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| InitialiseCells() | AbstractCellPopulation< DIM > | [inline] |
| IsCellAssociatedWithADeletedLocation(CellPtr pCell) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| mCellCyclePhaseCount | AbstractCellPopulation< DIM > | [protected] |
| mCellLocationMap | AbstractCellPopulation< DIM > | [protected] |
| mCellProliferativeTypeCount | AbstractCellPopulation< DIM > | [protected] |
| mCells | AbstractCellPopulation< DIM > | [protected] |
| mCentroid | AbstractCellPopulation< DIM > | [protected] |
| mDeleteMesh | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mDirPath | AbstractCellPopulation< DIM > | [protected] |
| mIterateRandomlyOverUpdateRuleCollection | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mLocationCellMap | AbstractCellPopulation< DIM > | [protected] |
| mNumSweepsPerTimestep | PottsBasedCellPopulation< DIM > | [private] |
| mOutputCellAges | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellAncestors | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellCyclePhases | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellIdData | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellMutationStates | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellProliferativeTypes | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVariables | AbstractCellPopulation< DIM > | [protected] |
| mOutputCellVolumes | AbstractCellPopulation< DIM > | [protected] |
| mpCellAgesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellCyclePhasesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellIdFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellMutationStatesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellPropertyRegistry | AbstractCellPopulation< DIM > | [protected] |
| mpCellVariablesFile | AbstractCellPopulation< DIM > | [protected] |
| mpCellVolumesFile | AbstractCellPopulation< DIM > | [protected] |
| mpElementTessellation | PottsBasedCellPopulation< DIM > | [private] |
| mpVizBoundaryNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellAncestorsFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellProliferativePhasesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizCellProliferativeTypesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVizElementsFile | PottsBasedCellPopulation< DIM > | [private] |
| mpVizNodesFile | AbstractCellPopulation< DIM > | [protected] |
| mpVtkMetaFile | AbstractCellPopulation< DIM > | [protected] |
| mrMesh | PottsBasedCellPopulation< DIM > | [private] |
| mTemperature | PottsBasedCellPopulation< DIM > | [private] |
| mUpdateNodesInRandomOrder | AbstractOnLatticeCellPopulation< DIM > | [protected] |
| mUpdateRuleCollection | PottsBasedCellPopulation< DIM > | [private] |
| OutputCellPopulationInfo(out_stream &rParamsFile) | AbstractCellPopulation< DIM > | [inline] |
| OutputCellPopulationParameters(out_stream &rParamsFile) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| PottsBasedCellPopulation(PottsMesh< DIM > &rMesh, std::vector< CellPtr > &rCells, bool deleteMesh=false, bool validate=true, const std::vector< unsigned > locationIndices=std::vector< unsigned >()) | PottsBasedCellPopulation< DIM > | [inline] |
| PottsBasedCellPopulation(PottsMesh< DIM > &rMesh) | PottsBasedCellPopulation< DIM > | [inline] |
| RemoveDeadCells() | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| rGetCellCyclePhaseCount() const | AbstractCellPopulation< DIM > | [inline] |
| rGetCellProliferativeTypeCount() const | AbstractCellPopulation< DIM > | [inline] |
| rGetCells() | AbstractCellPopulation< DIM > | [inline] |
| rGetMesh() | PottsBasedCellPopulation< DIM > | [inline] |
| rGetMesh() const | PottsBasedCellPopulation< DIM > | [inline] |
| rGetUpdateRuleCollection() const | PottsBasedCellPopulation< DIM > | [inline] |
| serialize(Archive &archive, const unsigned int version) | PottsBasedCellPopulation< DIM > | [inline, private] |
| SetCellAncestorsToLocationIndices() | AbstractCellPopulation< DIM > | [inline] |
| SetDefaultMutationStateOrdering() | AbstractCellPopulation< DIM > | [inline] |
| SetIterateRandomlyOverUpdateRuleCollection(bool iterateRandomly) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| SetNode(unsigned index, ChastePoint< DIM > &rNewLocation) | AbstractOnLatticeCellPopulation< DIM > | [inline, virtual] |
| SetNumSweepsPerTimestep(unsigned numSweepsPerTimestep) | PottsBasedCellPopulation< DIM > | [inline] |
| SetOutputCellAges(bool outputCellAges) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellAncestors(bool outputCellAncestors) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellCyclePhases(bool outputCellCyclePhases) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellIdData(bool outputCellIdData) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellMutationStates(bool outputCellMutationStates) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellProliferativeTypes(bool outputCellProliferativeTypes) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellVariables(bool outputCellVariables) | AbstractCellPopulation< DIM > | [inline] |
| SetOutputCellVolumes(bool outputCellVolumes) | AbstractCellPopulation< DIM > | [inline] |
| SetTemperature(double temperature) | PottsBasedCellPopulation< DIM > | [inline] |
| SetUpdateNodesInRandomOrder(bool updateNodesInRandomOrder) | AbstractOnLatticeCellPopulation< DIM > | [inline] |
| TestPottsBasedCellPopulation (defined in PottsBasedCellPopulation< DIM >) | PottsBasedCellPopulation< DIM > | [friend] |
| Update(bool hasHadBirthsOrDeaths=true) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| UpdateCellLocations(double dt) | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| Validate() | PottsBasedCellPopulation< DIM > | [inline, private, virtual] |
| WriteCellIdDataToFile() | AbstractCellPopulation< DIM > | [inline] |
| WriteCellResultsToFiles(std::vector< unsigned > &rCellProliferativeTypeCounter, std::vector< unsigned > &rCellCyclePhaseCounter) | AbstractCellPopulation< DIM > | [inline] |
| WriteCellVolumeResultsToFile() | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| WriteResultsToFiles() | PottsBasedCellPopulation< DIM > | [inline, virtual] |
| WriteTimeAndNodeResultsToFiles() | AbstractCellPopulation< DIM > | [inline, virtual] |
| WriteVtkResultsToFile() | PottsBasedCellPopulation< DIM > | [inline, private, virtual] |
| ~AbstractCellPopulation() | AbstractCellPopulation< DIM > | [inline, virtual] |
| ~AbstractOnLatticeCellPopulation() | AbstractOnLatticeCellPopulation< DIM > | [inline, virtual] |
| ~Identifiable() | Identifiable | [virtual] |
| ~PottsBasedCellPopulation() | PottsBasedCellPopulation< DIM > | [inline, virtual] |
