#include <AbstractCellMutationState.hpp>
Inheritance diagram for AbstractCellMutationState:
Collaboration diagram for AbstractCellMutationState:
Public Member Functions | |
| AbstractCellMutationState (unsigned colour) | |
| virtual | ~AbstractCellMutationState () |
| unsigned | GetColour () const |
Private Member Functions | |
| template<class Archive > | |
| void | serialize (Archive &archive, const unsigned int version) |
| AbstractCellMutationState () | |
Private Attributes | |
| unsigned | mColour |
Friends | |
| class | boost::serialization::access |
Detailed Description
Base class for cell mutation states.
Each Cell has a (shared pointer to a) mutation state instance, which will be an instance of a subclass of this class. When setting up a CellBasedSimulation, the user must specify a list of AbstractCellMutationState instances, which represent the possible mutations that can occur in the simulation (including WildTypeCellMutationState). This provides a registry of available mutation states, and cells will point to one of these objects.
The mutation state objects keep track of the number of cells in a given mutation state, as well as what colour should be used by the visualizer to display cells in each state.
Definition at line 58 of file AbstractCellMutationState.hpp.
Constructor & Destructor Documentation
| AbstractCellMutationState::AbstractCellMutationState | ( | ) | [private] |
Default constructor needs to be defined for archiving, but never actually used, since subclasses call the normal constructor.
Definition at line 39 of file AbstractCellMutationState.cpp.
References NEVER_REACHED.
| AbstractCellMutationState::AbstractCellMutationState | ( | unsigned | colour | ) |
Constructor.
- Parameters:
-
colour what colour cells with this mutation state should be in the visualizer
Definition at line 45 of file AbstractCellMutationState.cpp.
| AbstractCellMutationState::~AbstractCellMutationState | ( | ) | [virtual] |
Virtual destructor, to make this class polymorphic.
Definition at line 51 of file AbstractCellMutationState.cpp.
Member Function Documentation
| unsigned AbstractCellMutationState::GetColour | ( | ) | const |
| void AbstractCellMutationState::serialize | ( | Archive & | archive, |
| const unsigned int | version | ||
| ) | [inline, private] |
Archive the member variables.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractCellProperty.
Reimplemented in ApcOneHitCellMutationState, ApcTwoHitCellMutationState, BetaCateninOneHitCellMutationState, and WildTypeCellMutationState.
Definition at line 76 of file AbstractCellMutationState.hpp.
References mColour.
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractCellProperty.
Reimplemented in ApcOneHitCellMutationState, ApcTwoHitCellMutationState, BetaCateninOneHitCellMutationState, and WildTypeCellMutationState.
Definition at line 68 of file AbstractCellMutationState.hpp.
Member Data Documentation
unsigned AbstractCellMutationState::mColour [private] |
Colour for use by visualizer.
Definition at line 65 of file AbstractCellMutationState.hpp.
Referenced by GetColour(), and serialize().
The documentation for this class was generated from the following files:
- cell_based/src/population/cell/mutations/AbstractCellMutationState.hpp
- cell_based/src/population/cell/mutations/AbstractCellMutationState.cpp
