, including all inherited members.
AbstractCardiacCell(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCell | |
AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCellInterface | |
AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
AdjustOutOfRangeSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
boost::serialization::access class | CML_noble_varghese_kohl_noble_1998_basic_with_sac | [friend] |
CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | [virtual] |
CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | [virtual] |
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
CML_noble_varghese_kohl_noble_1998_basic_with_sac(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | CML_noble_varghese_kohl_noble_1998_basic_with_sac | |
Compute(double tStart, double tEnd, double tSamp=0.0) | AbstractCardiacCell | [virtual] |
ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | [virtual] |
ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
ComputeExceptVoltage(double tStart, double tEnd) | AbstractCardiacCell | [virtual] |
DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
DumpState(const std::string &rMessage, std::vector< double >Y) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
EvaluateYDerivatives(double var_environment__time, const std::vector< double > &rY, std::vector< double > &rDY) | CML_noble_varghese_kohl_noble_1998_basic_with_sac | [virtual] |
GetAnyVariable(const std::string &rName, double time=0.0) | AbstractCardiacCell | [virtual] |
AbstractOdeSystem::GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractOdeSystem::GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetIIonic(const std::vector< double > *pStateVariables=NULL) | CML_noble_varghese_kohl_noble_1998_basic_with_sac | [virtual] |
GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
GetIntracellularAreaStimulus(double time) | AbstractCardiacCellInterface | |
GetIntracellularCalciumConcentration() | CML_noble_varghese_kohl_noble_1998_basic_with_sac | [inline, virtual] |
GetIntracellularStimulus(double time) | AbstractCardiacCellInterface | |
GetLookupTableCollection() | AbstractCardiacCellInterface | [inline, virtual] |
GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfParameters() const | AbstractCardiacCell | [virtual] |
GetNumberOfStateVariables() const | AbstractCardiacCell | [virtual] |
GetNumSlowValues() | AbstractCardiacCell | [virtual] |
GetParameter(const std::string &rParameterName) | AbstractCardiacCell | [virtual] |
GetParameter(unsigned parameterIndex) | AbstractCardiacCell | [virtual] |
AbstractOdeSystem::GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
AbstractOdeSystem::GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
GetSolver() const | AbstractCardiacCellInterface | |
GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetStdVecStateVariables() | AbstractCardiacCell | [virtual] |
GetStimulus(double time) | AbstractCardiacCellInterface | |
GetStimulusFunction() | AbstractCardiacCellInterface | |
GetStimulusFunction() const | AbstractCardiacCellInterface | |
GetStretch() | CML_noble_varghese_kohl_noble_1998_basic_with_sac | [inline] |
GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
GetUseAnalyticJacobian() | AbstractOdeSystem | |
GetVoltage() | AbstractCardiacCell | [virtual] |
GetVoltageIndex() | AbstractCardiacCellInterface | |
HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasCellMLDefaultStimulus() | AbstractCardiacCellInterface | |
HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
Init() | AbstractCardiacCell | |
IsFastOnly() | AbstractCardiacCell | [virtual] |
mDt | AbstractCardiacCell | [protected] |
mFixedVoltage | AbstractCardiacCellInterface | [protected] |
mHasDefaultStimulusFromCellML | AbstractCardiacCellInterface | [protected] |
mIsUsedInTissue | AbstractCardiacCellInterface | [protected] |
mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | [protected] |
mParameters | AbstractParameterisedSystem< std::vector< double > > | [protected] |
mpIntracellularStimulus | AbstractCardiacCellInterface | [protected] |
mpOdeSolver | AbstractCardiacCellInterface | [protected] |
mpSystemInfo | AbstractUntemplatedParameterisedSystem | [protected] |
mSetVoltageDerivativeToZero | AbstractCardiacCellInterface | [protected] |
mStateVariables | AbstractParameterisedSystem< std::vector< double > > | [protected] |
mStretch | CML_noble_varghese_kohl_noble_1998_basic_with_sac | [private] |
mUseAnalyticJacobian | AbstractOdeSystem | [protected] |
mVoltageIndex | AbstractCardiacCellInterface | [protected] |
ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | |
rGetConstStateVariables() const | AbstractOdeSystem | |
rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetStateVariableNames() const | AbstractCardiacCell | [virtual] |
rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
serialize(Archive &archive, const unsigned int version) | CML_noble_varghese_kohl_noble_1998_basic_with_sac | [inline, private] |
SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
SetFixedVoltage(double voltage) | AbstractCardiacCellInterface | |
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetParameter(const std::string &rParameterName, double value) | AbstractCardiacCell | [virtual] |
SetParameter(unsigned parameterIndex, double value) | AbstractCardiacCell | [virtual] |
SetSlowValues(const std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
SetState(CellModelState state) | AbstractCardiacCell | [virtual] |
SetStateVariable(unsigned index, double newValue) | AbstractCardiacCell | [virtual] |
SetStateVariable(const std::string &rName, double newValue) | AbstractCardiacCell | [virtual] |
SetStateVariables(const std::vector< double > &rVariables) | AbstractCardiacCell | [virtual] |
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetStretch(double stretch) | CML_noble_varghese_kohl_noble_1998_basic_with_sac | [inline, virtual] |
SetTimestep(double dt) | AbstractCardiacCell | [virtual] |
SetUsedInTissueSimulation(bool tissue=true) | AbstractCardiacCellInterface | |
SetVoltage(double voltage) | AbstractCardiacCell | [virtual] |
SetVoltageDerivativeToZero(bool clamp=true) | AbstractCardiacCellInterface | [virtual] |
SolveAndUpdateState(double tStart, double tEnd) | AbstractCardiacCell | [virtual] |
UseCellMLDefaultStimulus() | AbstractCardiacCellInterface | [virtual] |
VerifyStateVariables() | AbstractParameterisedSystem< std::vector< double > > | [inline, virtual] |
~AbstractCardiacCell() | AbstractCardiacCell | [virtual] |
~AbstractCardiacCellInterface() | AbstractCardiacCellInterface | [virtual] |
~AbstractOdeSystem() | AbstractOdeSystem | [virtual] |
~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | [virtual] |
~CML_noble_varghese_kohl_noble_1998_basic_with_sac() | CML_noble_varghese_kohl_noble_1998_basic_with_sac | |