Chaste Release::3.1
Public Member Functions | Private Member Functions | Private Attributes | Friends
CML_noble_varghese_kohl_noble_1998_basic_with_sac Class Reference

#include <NobleVargheseKohlNoble1998WithSac.hpp>

Inheritance diagram for CML_noble_varghese_kohl_noble_1998_basic_with_sac:
Collaboration diagram for CML_noble_varghese_kohl_noble_1998_basic_with_sac:

List of all members.

Public Member Functions

 CML_noble_varghese_kohl_noble_1998_basic_with_sac (boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)
 ~CML_noble_varghese_kohl_noble_1998_basic_with_sac ()
double GetIIonic (const std::vector< double > *pStateVariables=NULL)
void EvaluateYDerivatives (double var_environment__time, const std::vector< double > &rY, std::vector< double > &rDY)
void SetStretch (double stretch)
double GetStretch ()
double GetIntracellularCalciumConcentration ()

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)

Private Attributes

double mStretch

Friends

class boost::serialization::access

Detailed Description

The Noble98 'Basic' model, but hand-altered to add a stretch activation channel ionic current, which is dependent on the stretch the cell is under (an additional member variable which can be set be the user/mechanics solver

Definition at line 55 of file NobleVargheseKohlNoble1998WithSac.hpp.

Constructor & Destructor Documentation

CML_noble_varghese_kohl_noble_1998_basic_with_sac::CML_noble_varghese_kohl_noble_1998_basic_with_sac ( boost::shared_ptr< AbstractIvpOdeSolver >  pSolver,
boost::shared_ptr< AbstractStimulusFunction >  pIntracellularStimulus 
)

Constructor.

Parameters:
pSolverODE solver to use
pIntracellularStimulusintracellular stimulus to apply

Definition at line 39 of file NobleVargheseKohlNoble1998WithSac.cpp.

References AbstractCardiacCell::Init(), AbstractUntemplatedParameterisedSystem::mpSystemInfo, and mStretch.

CML_noble_varghese_kohl_noble_1998_basic_with_sac::~CML_noble_varghese_kohl_noble_1998_basic_with_sac ( void  )

Destructor.

Definition at line 52 of file NobleVargheseKohlNoble1998WithSac.cpp.

Member Function Documentation

void CML_noble_varghese_kohl_noble_1998_basic_with_sac::EvaluateYDerivatives ( double  var_environment__time,
const std::vector< double > &  rY,
std::vector< double > &  rDY 
) [virtual]

Evaluate the RHS of this cell's ODE system.

Parameters:
var_environment__timecurrent simulation time
rYstate variable vector
rDYwill be filled in with the derivatives

Implements AbstractOdeSystem.

Definition at line 251 of file NobleVargheseKohlNoble1998WithSac.cpp.

References AbstractCardiacCellInterface::GetStimulus(), AbstractCardiacCellInterface::mSetVoltageDerivativeToZero, and mStretch.

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetIIonic ( const std::vector< double > *  pStateVariables = NULL) [virtual]

Compute the total ionic current

Parameters:
pStateVariablesstate variable vector; if not given, use cell's internal state

Implements AbstractCardiacCellInterface.

Definition at line 56 of file NobleVargheseKohlNoble1998WithSac.cpp.

References HeartConfig::GetCapacitance(), HeartConfig::Instance(), mStretch, and AbstractParameterisedSystem< std::vector< double > >::rGetStateVariables().

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetIntracellularCalciumConcentration ( ) [inline, virtual]

Get the intracellular calcium concentration

Returns:
the intracellular calcium concentration

Reimplemented from AbstractCardiacCellInterface.

Definition at line 124 of file NobleVargheseKohlNoble1998WithSac.hpp.

References AbstractParameterisedSystem< std::vector< double > >::mStateVariables.

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetStretch ( ) [inline]

Get the stretch

Definition at line 114 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

template<class Archive >
void CML_noble_varghese_kohl_noble_1998_basic_with_sac::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Checkpointing.

Parameters:
archive
version

Reimplemented from AbstractCardiacCell.

Definition at line 64 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

void CML_noble_varghese_kohl_noble_1998_basic_with_sac::SetStretch ( double  stretch) [inline, virtual]

Set the stretch (overloaded)

Parameters:
stretchstretch

Reimplemented from AbstractCardiacCellInterface.

Definition at line 105 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCardiacCell.

Definition at line 57 of file NobleVargheseKohlNoble1998WithSac.hpp.

Member Data Documentation

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::mStretch [private]

The stretch the cell is under - affects the stretch-activated-channel ionic current

Definition at line 72 of file NobleVargheseKohlNoble1998WithSac.hpp.

Referenced by CML_noble_varghese_kohl_noble_1998_basic_with_sac(), EvaluateYDerivatives(), GetIIonic(), GetStretch(), serialize(), and SetStretch().

The documentation for this class was generated from the following files: