CellsGenerator< CELL_CYCLE_MODEL, DIM > Class Template Reference

#include <CellsGenerator.hpp>

Inheritance diagram for CellsGenerator< CELL_CYCLE_MODEL, DIM >:

List of all members.

Public Member Functions
void	GenerateBasic (std::vector< CellPtr > &rCells, unsigned numCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >(), CellProliferativeType cellProliferativeType=STEM)
void	GenerateBasicRandom (std::vector< CellPtr > &rCells, unsigned numCells, CellProliferativeType cellProliferativeType=STEM)
void	GenerateGivenLocationIndices (std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices, CellProliferativeType cellProliferativeType=STEM)

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Detailed Description

template<class CELL_CYCLE_MODEL, unsigned DIM>
class CellsGenerator< CELL_CYCLE_MODEL, DIM >

A helper class for generating a vector of cells for a given mesh.

It is templated over types of cell-cycle model and spatial dimension.

Definition at line 51 of file CellsGenerator.hpp.

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Member Function Documentation

template<class CELL_CYCLE_MODEL , unsigned DIM>

void CellsGenerator< CELL_CYCLE_MODEL, DIM >::GenerateBasic	(	std::vector< CellPtr > &	rCells,
		unsigned	numCells,
		const std::vector< unsigned >	locationIndices = std::vector<unsigned>(),
		CellProliferativeType	cellProliferativeType = STEM
	)

Fills a vector of cells with a specified cell-cycle model, to match a given number of cells. Gives them birth times of 0 for node 0, -1 for node 1, -2 for node 2 etc...

Parameters:

rCells	An empty vector of cells to fill up.
numCells	The number of cells to generate.
locationIndices	is used when a birth-time hint is needed for individual cell. Defaults to an empty vector -- otherwise must be of length numCells
cellProliferativeType	the cell proliferative type to give each cell (defaults to STEM)

Definition at line 97 of file CellsGenerator.hpp.

References CellPropertyRegistry::Clear(), EXCEPTION, and CellPropertyRegistry::Instance().

template<class CELL_CYCLE_MODEL , unsigned DIM>

void CellsGenerator< CELL_CYCLE_MODEL, DIM >::GenerateBasicRandom	(	std::vector< CellPtr > &	rCells,
		unsigned	numCells,
		CellProliferativeType	cellProliferativeType = STEM
	)

Fills a vector of cells with a specified cell-cycle model, to match a given number of cells. Gives cells a random birth time drawn uniformly from 0 to the AverageStemCellCycleTime.

Parameters:

rCells	An empty vector of cells to fill up.
numCells	The number of cells to generate.
cellProliferativeType	the cell proliferative type to give each cell (defaults to STEM)

Definition at line 140 of file CellsGenerator.hpp.

References CellPropertyRegistry::Clear(), RandomNumberGenerator::Instance(), CellPropertyRegistry::Instance(), and RandomNumberGenerator::ranf().

template<class CELL_CYCLE_MODEL , unsigned DIM>

void CellsGenerator< CELL_CYCLE_MODEL, DIM >::GenerateGivenLocationIndices	(	std::vector< CellPtr > &	rCells,
		const std::vector< unsigned >	locationIndices,
		CellProliferativeType	cellProliferativeType = STEM
	)

Fills a vector of cells with birth times to match a given vector of location indices.

Parameters:

rCells	An empty vector of cells to fill up.
locationIndices	The indices of the cell population to assign real cells to.
cellProliferativeType	the cell proliferative type to give each cell (defaults to STEM)

Definition at line 171 of file CellsGenerator.hpp.

References CellPropertyRegistry::Clear(), and CellPropertyRegistry::Instance().

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The documentation for this class was generated from the following file:

• cell_based/src/population/cell/CellsGenerator.hpp