, including all inherited members.
AbstractCardiacCell(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned numberOfStateVariables, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCell | |
AbstractCardiacCellInterface(boost::shared_ptr< AbstractIvpOdeSolver > pOdeSolver, unsigned voltageIndex, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | AbstractCardiacCellInterface | |
AbstractOdeSystem(unsigned numberOfStateVariables) | AbstractOdeSystem | |
AbstractParameterisedSystem(unsigned numberOfStateVariables) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractUntemplatedParameterisedSystem(unsigned numberOfStateVariables) | AbstractUntemplatedParameterisedSystem | |
ACh | CorriasBuistSMCModified | [private] |
AdjustOutOfRangeSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
Asurf | CorriasBuistSMCModified | [private] |
Asurf_in_cm_square | CorriasBuistSMCModified | [private] |
boost::serialization::access class | CorriasBuistSMCModified | [friend] |
Ca_o | CorriasBuistSMCModified | [private] |
CaiRest | CorriasBuistSMCModified | [private] |
CalculateRootFunction(double time, const std::vector< double > &rY) | AbstractOdeSystem | [virtual] |
CalculateStoppingEvent(double time, const std::vector< double > &rY) | AbstractOdeSystem | [virtual] |
CheckParametersOnLoad(const std::vector< double > &rParameters, const std::vector< std::string > &rParameterNames) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
Cm | CorriasBuistSMCModified | [private] |
Compute(double tStart, double tEnd, double tSamp=0.0) | AbstractCardiacCell | [virtual] |
ComputeDerivedQuantities(double time, const std::vector< double > &rState) | AbstractParameterisedSystem< std::vector< double > > | [virtual] |
ComputeDerivedQuantitiesFromCurrentState(double time) | AbstractParameterisedSystem< std::vector< double > > | |
ComputeExceptVoltage(double tStart, double tEnd) | AbstractCardiacCell | [virtual] |
CorriasBuistSMCModified(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus) | CorriasBuistSMCModified | |
DumpState(const std::string &rMessage) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
DumpState(const std::string &rMessage, std::vector< double >Y) | AbstractParameterisedSystem< std::vector< double > > | [protected] |
EK | CorriasBuistSMCModified | [private] |
ENa | CorriasBuistSMCModified | [private] |
EnsCC | CorriasBuistSMCModified | [private] |
EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY) | CorriasBuistSMCModified | [virtual] |
F | CorriasBuistSMCModified | [private] |
FoRT | CorriasBuistSMCModified | [private] |
gBK_max | CorriasBuistSMCModified | [private] |
gCaL_max | CorriasBuistSMCModified | [private] |
gcouple | CorriasBuistSMCModified | [private] |
GetAnyVariable(const std::string &rName, double time=0.0) | AbstractCardiacCell | [virtual] |
AbstractOdeSystem::GetAnyVariable(unsigned index, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
AbstractOdeSystem::GetAnyVariable(const std::string &rName, double time=0.0, std::vector< double > *pDerivedQuantities=NULL) | AbstractParameterisedSystem< std::vector< double > > | |
GetAnyVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetAnyVariableUnits(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetCarbonMonoxideScaleFactor() | CorriasBuistSMCModified | |
GetDerivedQuantityIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetDerivedQuantityUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetFakeIccStimulusPresent() | CorriasBuistSMCModified | |
GetIIonic(const std::vector< double > *pStateVariables=NULL) | CorriasBuistSMCModified | [virtual] |
GetInitialConditions() const | AbstractParameterisedSystem< std::vector< double > > | |
GetIntracellularAreaStimulus(double time) | AbstractCardiacCellInterface | |
GetIntracellularCalciumConcentration() | AbstractCardiacCellInterface | [virtual] |
GetIntracellularStimulus(double time) | AbstractCardiacCellInterface | |
GetLookupTableCollection() | AbstractCardiacCellInterface | [inline, virtual] |
GetNumberOfAttributes() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfDerivedQuantities() const | AbstractUntemplatedParameterisedSystem | |
GetNumberOfParameters() const | AbstractCardiacCell | [virtual] |
GetNumberOfStateVariables() const | AbstractCardiacCell | [virtual] |
GetNumSlowValues() | AbstractCardiacCell | [virtual] |
GetParameter(const std::string &rParameterName) | AbstractCardiacCell | [virtual] |
GetParameter(unsigned parameterIndex) | AbstractCardiacCell | [virtual] |
AbstractOdeSystem::GetParameter(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
AbstractOdeSystem::GetParameter(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetParameterIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetParameterUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetSlowValues(std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
GetSolver() const | AbstractCardiacCellInterface | |
GetStateVariable(unsigned index) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariable(const std::string &rName) const | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableIndex(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
GetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
GetStateVariableUnits(unsigned index) const | AbstractUntemplatedParameterisedSystem | |
GetStdVecStateVariables() | AbstractCardiacCell | [virtual] |
GetStimulus(double time) | AbstractCardiacCellInterface | |
GetStimulusFunction() | AbstractCardiacCellInterface | |
GetStimulusFunction() const | AbstractCardiacCellInterface | |
GetSystemInformation() const | AbstractUntemplatedParameterisedSystem | |
GetSystemName() const | AbstractUntemplatedParameterisedSystem | |
GetUseAnalyticJacobian() | AbstractOdeSystem | |
GetVoltage() | AbstractCardiacCell | [virtual] |
GetVoltageIndex() | AbstractCardiacCellInterface | |
gKA_max | CorriasBuistSMCModified | [private] |
gKb_max | CorriasBuistSMCModified | [private] |
gKr_max | CorriasBuistSMCModified | [private] |
gLVA_max | CorriasBuistSMCModified | [private] |
gNa_max | CorriasBuistSMCModified | [private] |
gnsCC_max | CorriasBuistSMCModified | [private] |
HasAnyVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasAttribute(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasCellMLDefaultStimulus() | AbstractCardiacCellInterface | |
HasDerivedQuantity(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasParameter(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
HasStateVariable(const std::string &rName) const | AbstractUntemplatedParameterisedSystem | |
hCa | CorriasBuistSMCModified | [private] |
Init() | AbstractCardiacCell | |
IsFastOnly() | AbstractCardiacCell | [virtual] |
JCaExt_max | CorriasBuistSMCModified | [private] |
K_o | CorriasBuistSMCModified | [private] |
Ki | CorriasBuistSMCModified | [private] |
mDt | AbstractCardiacCell | [protected] |
mFakeIccStimulusPresent | CorriasBuistSMCModified | [private] |
mFixedVoltage | AbstractCardiacCellInterface | [protected] |
mHasDefaultStimulusFromCellML | AbstractCardiacCellInterface | [protected] |
mIsUsedInTissue | AbstractCardiacCellInterface | [protected] |
mNumberOfStateVariables | AbstractUntemplatedParameterisedSystem | [protected] |
mParameters | AbstractParameterisedSystem< std::vector< double > > | [protected] |
mpIntracellularStimulus | AbstractCardiacCellInterface | [protected] |
mpOdeSolver | AbstractCardiacCellInterface | [protected] |
mpSystemInfo | AbstractUntemplatedParameterisedSystem | [protected] |
mScaleFactorCarbonMonoxide | CorriasBuistSMCModified | [private] |
mSetVoltageDerivativeToZero | AbstractCardiacCellInterface | [protected] |
mStateVariables | AbstractParameterisedSystem< std::vector< double > > | [protected] |
mUseAnalyticJacobian | AbstractOdeSystem | [protected] |
mVoltageIndex | AbstractCardiacCellInterface | [protected] |
Na_o | CorriasBuistSMCModified | [private] |
Nai | CorriasBuistSMCModified | [private] |
Q10Ca | CorriasBuistSMCModified | [private] |
Q10K | CorriasBuistSMCModified | [private] |
Q10Na | CorriasBuistSMCModified | [private] |
R | CorriasBuistSMCModified | [private] |
ResetToInitialConditions() | AbstractParameterisedSystem< std::vector< double > > | |
rGetConstStateVariables() const | AbstractOdeSystem | |
rGetDerivedQuantityNames() const | AbstractUntemplatedParameterisedSystem | |
rGetDerivedQuantityUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterNames() const | AbstractUntemplatedParameterisedSystem | |
rGetParameterUnits() const | AbstractUntemplatedParameterisedSystem | |
rGetStateVariableNames() const | AbstractCardiacCell | [virtual] |
rGetStateVariables() | AbstractParameterisedSystem< std::vector< double > > | |
rGetStateVariableUnits() const | AbstractUntemplatedParameterisedSystem | |
RToF | CorriasBuistSMCModified | [private] |
sCa | CorriasBuistSMCModified | [private] |
serialize(Archive &archive, const unsigned int version) | CorriasBuistSMCModified | [inline, private] |
SetAnyVariable(unsigned index, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetAnyVariable(const std::string &rName, double value) | AbstractParameterisedSystem< std::vector< double > > | |
SetCarbonMonoxideScaleFactor() | CorriasBuistSMCModified | |
SetCarbonMonoxideScaleFactor(double scaleFactor) | CorriasBuistSMCModified | |
SetDefaultInitialCondition(unsigned index, double initialCondition) | AbstractParameterisedSystem< std::vector< double > > | |
SetDefaultInitialConditions(const std::vector< double > &rInitialConditions) | AbstractParameterisedSystem< std::vector< double > > | |
SetFakeIccStimulusPresent(bool present) | CorriasBuistSMCModified | |
SetFixedVoltage(double voltage) | AbstractCardiacCellInterface | |
SetIntracellularStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetParameter(const std::string &rParameterName, double value) | AbstractCardiacCell | [virtual] |
SetParameter(unsigned parameterIndex, double value) | AbstractCardiacCell | [virtual] |
SetSlowValues(const std::vector< double > &rSlowValues) | AbstractCardiacCell | [virtual] |
SetState(CellModelState state) | AbstractCardiacCell | [virtual] |
SetStateVariable(unsigned index, double newValue) | AbstractCardiacCell | [virtual] |
SetStateVariable(const std::string &rName, double newValue) | AbstractCardiacCell | [virtual] |
SetStateVariables(const std::vector< double > &rVariables) | AbstractCardiacCell | [virtual] |
SetStimulusFunction(boost::shared_ptr< AbstractStimulusFunction > pStimulus) | AbstractCardiacCellInterface | |
SetStretch(double stretch) | AbstractCardiacCellInterface | [inline, virtual] |
SetTimestep(double dt) | AbstractCardiacCell | [virtual] |
SetUsedInTissueSimulation(bool tissue=true) | AbstractCardiacCellInterface | |
SetVoltage(double voltage) | AbstractCardiacCell | [virtual] |
SetVoltageDerivativeToZero(bool clamp=true) | AbstractCardiacCellInterface | [virtual] |
SolveAndUpdateState(double tStart, double tEnd) | AbstractCardiacCell | [virtual] |
T | CorriasBuistSMCModified | [private] |
T_correct_Ca | CorriasBuistSMCModified | [private] |
T_correct_gBK | CorriasBuistSMCModified | [private] |
T_correct_K | CorriasBuistSMCModified | [private] |
T_correct_Na | CorriasBuistSMCModified | [private] |
Texp | CorriasBuistSMCModified | [private] |
UseCellMLDefaultStimulus() | AbstractCardiacCellInterface | [virtual] |
VerifyStateVariables() | CorriasBuistSMCModified | [virtual] |
VolCell | CorriasBuistSMCModified | [private] |
~AbstractCardiacCell() | AbstractCardiacCell | [virtual] |
~AbstractCardiacCellInterface() | AbstractCardiacCellInterface | [virtual] |
~AbstractOdeSystem() | AbstractOdeSystem | [virtual] |
~AbstractUntemplatedParameterisedSystem() | AbstractUntemplatedParameterisedSystem | [virtual] |
~CorriasBuistSMCModified() | CorriasBuistSMCModified | |