Chaste Release::3.1
Public Member Functions
Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <Hdf5ToTxtConverter.hpp>

Inheritance diagram for Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >:
Collaboration diagram for Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >:

List of all members.

Public Member Functions

 Hdf5ToTxtConverter (std::string inputDirectory, std::string fileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >

This class converts from Hdf5 format to a .txt format that is readable by Matlab.

There is one output file per variable per timestep, giving the values of that variable at that time over each of the nodes.

Definition at line 49 of file Hdf5ToTxtConverter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToTxtConverter ( std::string  inputDirectory,
std::string  fileBaseName,
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *  pMesh 
)

Constructor, which does the conversion and writes the .txt file.

Parameters:
inputDirectoryThe input directory, relative to CHASTE_TEST_OUTPUT, where the .h5 file has been written
fileBaseNameThe base name of the data file.
pMeshPointer to the mesh.

Definition at line 47 of file Hdf5ToTxtConverter.cpp.

References PetscTools::AmMaster(), DistributedVectorFactory::CreateVec(), PetscTools::Destroy(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetDistributedVectorFactory(), Hdf5DataReader::GetNumberOfRows(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), ReplicatableVector::GetSize(), Hdf5DataReader::GetUnlimitedDimensionValues(), Hdf5DataReader::GetVariableNames(), Hdf5DataReader::GetVariableOverNodes(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mNumVariables, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mRelativeSubdirectory, OutputFileHandler::OpenOutputFile(), and ReplicatableVector::ReplicatePetscVector().

The documentation for this class was generated from the following files: