| AbstractCellCycleModel() | AbstractCellCycleModel | |
| AbstractOdeBasedCellCycleModel(double lastTime=SimulationTime::Instance()->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | AbstractOdeBasedCellCycleModel | |
| AdjustOdeParameters(double currentTime) | Alarcon2004OxygenBasedCellCycleModel | [private, virtual] |
| Alarcon2004OxygenBasedCellCycleModel(boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | Alarcon2004OxygenBasedCellCycleModel | |
| boost::serialization::access class | Alarcon2004OxygenBasedCellCycleModel | [friend] |
| CanCellTerminallyDifferentiate() | AbstractCellCycleModel | [virtual] |
| CellCycleModelOdeHandler(double lastTime=SimulationTime::Instance()->GetTime(), boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | CellCycleModelOdeHandler | |
| CreateCellCycleModel() | Alarcon2004OxygenBasedCellCycleModel | [virtual] |
| GetAge() | AbstractCellCycleModel | |
| GetAverageStemCellCycleTime() | AbstractCellCycleModel | [virtual] |
| GetAverageTransitCellCycleTime() | AbstractCellCycleModel | [virtual] |
| GetBirthTime() const | AbstractCellCycleModel | |
| GetCell() | AbstractCellCycleModel | |
| GetCurrentCellCyclePhase() | AbstractCellCycleModel | |
| GetDimension() | AbstractCellCycleModel | |
| GetDt() | CellCycleModelOdeHandler | |
| GetG1Duration() | AbstractCellCycleModel | [virtual] |
| GetG2Duration() | AbstractCellCycleModel | [virtual] |
| GetIdentifier() const | Identifiable | |
| GetMDuration() | AbstractCellCycleModel | [virtual] |
| GetMinimumGapDuration() | AbstractCellCycleModel | |
| GetOdeSolver() const | CellCycleModelOdeHandler | |
| GetOdeStopTime() | AbstractOdeBasedCellCycleModel | |
| GetOdeSystem() const | CellCycleModelOdeHandler | |
| GetProteinConcentrations() const | AbstractOdeBasedCellCycleModel | |
| GetSDuration() | AbstractCellCycleModel | [virtual] |
| GetSG2MDuration() | AbstractCellCycleModel | |
| GetStemCellG1Duration() | AbstractCellCycleModel | |
| GetTransitCellG1Duration() | AbstractCellCycleModel | |
| Initialise() | Alarcon2004OxygenBasedCellCycleModel | [virtual] |
| InitialiseDaughterCell() | AbstractCellCycleModel | [virtual] |
| mBirthTime | AbstractCellCycleModel | [protected] |
| mCurrentCellCyclePhase | AbstractCellCycleModel | [protected] |
| mDimension | AbstractCellCycleModel | [protected] |
| mDivideTime | AbstractOdeBasedCellCycleModel | [protected] |
| mDt | CellCycleModelOdeHandler | [protected] |
| mFinishedRunningOdes | AbstractOdeBasedCellCycleModel | [protected] |
| mG1Duration | AbstractCellCycleModel | [protected] |
| mG2Duration | AbstractCellCycleModel | [protected] |
| mG2PhaseStartTime | AbstractOdeBasedCellCycleModel | [protected] |
| mLastTime | CellCycleModelOdeHandler | [protected] |
| mMDuration | AbstractCellCycleModel | [protected] |
| mMinimumGapDuration | AbstractCellCycleModel | [protected] |
| mpCell | AbstractCellCycleModel | [protected] |
| mpOdeSolver | CellCycleModelOdeHandler | [protected] |
| mpOdeSystem | CellCycleModelOdeHandler | [protected] |
| mReadyToDivide | AbstractCellCycleModel | [protected] |
| mSDuration | AbstractCellCycleModel | [protected] |
| mStemCellG1Duration | AbstractCellCycleModel | [protected] |
| mTransitCellG1Duration | AbstractCellCycleModel | [protected] |
| OutputCellCycleModelInfo(out_stream &rParamsFile) | AbstractCellCycleModel | |
| OutputCellCycleModelParameters(out_stream &rParamsFile) | Alarcon2004OxygenBasedCellCycleModel | [virtual] |
| ReadyToDivide() | AbstractCellCycleModel | [virtual] |
| ResetForDivision() | Alarcon2004OxygenBasedCellCycleModel | [virtual] |
| serialize(Archive &archive, const unsigned int version) | Alarcon2004OxygenBasedCellCycleModel | [inline, private] |
| SetBirthTime(double birthTime) | AbstractOdeBasedCellCycleModel | [virtual] |
| SetCell(CellPtr pCell) | AbstractCellCycleModel | |
| SetDimension(unsigned dimension) | AbstractCellCycleModel | |
| SetDivideTime(double divideTime) | AbstractOdeBasedCellCycleModel | |
| SetDt(double timeStep) | CellCycleModelOdeHandler | |
| SetFinishedRunningOdes(bool finishedRunningOdes) | AbstractOdeBasedCellCycleModel | |
| SetG2Duration(double g2Duration) | AbstractCellCycleModel | |
| SetG2PhaseStartTime(double g2PhaseStartTime) | AbstractOdeBasedCellCycleModel | |
| SetLastTime(double lastTime) | CellCycleModelOdeHandler | |
| SetMDuration(double mDuration) | AbstractCellCycleModel | |
| SetMinimumGapDuration(double minimumGapDuration) | AbstractCellCycleModel | |
| SetOdeSystem(AbstractOdeSystem *pOdeSystem) | CellCycleModelOdeHandler | |
| SetProteinConcentrationsForTestsOnly(double lastTime, std::vector< double > proteinConcentrations) | AbstractOdeBasedCellCycleModel | |
| SetSDuration(double sDuration) | AbstractCellCycleModel | |
| SetStateVariables(const std::vector< double > &rStateVariables) | CellCycleModelOdeHandler | |
| SetStemCellG1Duration(double stemCellG1Duration) | AbstractCellCycleModel | [virtual] |
| SetTransitCellG1Duration(double transitCellG1Duration) | AbstractCellCycleModel | [virtual] |
| SolveOdeToTime(double currentTime) | CellCycleModelOdeHandler | [protected] |
| UpdateCellCyclePhase() | AbstractOdeBasedCellCycleModel | [virtual] |
| ~AbstractCellCycleModel() | AbstractCellCycleModel | [virtual] |
| ~AbstractOdeBasedCellCycleModel() | AbstractOdeBasedCellCycleModel | [virtual] |
| ~CellCycleModelOdeHandler() | CellCycleModelOdeHandler | [virtual] |
| ~Identifiable() | Identifiable | [virtual] |
