Chaste  Release::3.4
Public Member Functions | Private Member Functions | Friends | List of all members
AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > Class Template Referenceabstract

#include <AbstractCellPopulationCountWriter.hpp>

+ Inheritance diagram for AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >:
+ Collaboration diagram for AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions

 AbstractCellPopulationCountWriter (const std::string &rFileName)
 
virtual void WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
 
virtual void Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)=0
 
virtual void Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation)=0
 
virtual void Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation)=0
 
virtual void Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation)=0
 
virtual void Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation)=0
 
- Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
 AbstractCellBasedWriter (const std::string &rFileName)
 
virtual ~AbstractCellBasedWriter ()
 
void CloseFile ()
 
virtual void OpenOutputFile (OutputFileHandler &rOutputFileHandler)
 
void OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)
 
virtual void WriteTimeStamp ()
 
virtual void WriteNewline ()
 
void SetFileName (std::string fileName)
 
std::string GetFileName ()
 
- Public Member Functions inherited from Identifiable
virtual ~Identifiable ()
 
std::string GetIdentifier () const
 

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
 

Friends

class boost::serialization::access
 

Additional Inherited Members

- Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string mFileName
 
out_stream mpOutStream
 

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >

Abstract class for a writer that takes information from an AbstractCellPopulation and writes it to file.

The key difference between this class and AbstractCellPopulationWriter is that writers inheriting from this class are NOT compatible with a RoundRobin loop, because they write information that needs to be collected from all processes, such as global counters for mutation states. These writers concentrate the information from all processes and then write it at each timestep for which output is required.

Definition at line 61 of file AbstractCellPopulationCountWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >::AbstractCellPopulationCountWriter ( const std::string &  rFileName)

Default constructor.

Parameters
rFileNamethe name of the file to write to.

Definition at line 44 of file AbstractCellPopulationCountWriter.cpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
template<class Archive >
void AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >::serialize ( Archive &  archive,
const unsigned int  version 
)
inlineprivate

Serialize the object and its member variables.

Parameters
archivethe archive
versionthe current version of this class

Definition at line 73 of file AbstractCellPopulationCountWriter.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *  pCellPopulation)
pure virtual

Visit the population and write the data.

Parameters
pCellPopulationa pointer to the MeshBasedCellPopulation to visit.

Implemented in CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >, and CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( CaBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
pure virtual

Visit the population and write the data.

Parameters
pCellPopulationa pointer to the CaBasedCellPopulation to visit.

Implemented in CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >, and CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( NodeBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
pure virtual

Visit the population and write the data.

Parameters
pCellPopulationa pointer to the NodeBasedCellPopulation to visit.

Implemented in CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >, and CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( PottsBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
pure virtual

Visit the population and write the data.

Parameters
pCellPopulationa pointer to the PottsBasedCellPopulation to visit.

Implemented in CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >, and CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
virtual void AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( VertexBasedCellPopulation< SPACE_DIM > *  pCellPopulation)
pure virtual

Visit the population and write the data.

Parameters
pCellPopulationa pointer to the VertexBasedCellPopulation to visit.

Implemented in CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >, CellProliferativePhasesCountWriter< ELEMENT_DIM, SPACE_DIM >, and CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >::WriteHeader ( AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *  pCellPopulation)
virtual

Write the header to file.

Parameters
pCellPopulationa pointer to the population to be written.

Reimplemented in CellMutationStatesCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 50 of file AbstractCellPopulationCountWriter.cpp.

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
friend class boost::serialization::access
friend

Needed for serialization.

Definition at line 65 of file AbstractCellPopulationCountWriter.hpp.

The documentation for this class was generated from the following files: