#include <CellProliferativeTypesCountWriter.hpp>

Inheritance diagram for CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	CellProliferativeTypesCountWriter ()

void	VisitAnyPopulation (AbstractCellPopulation< SPACE_DIM, SPACE_DIM > *pCellPopulation)

virtual void	Visit (MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

virtual void	Visit (CaBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (NodeBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (PottsBasedCellPopulation< SPACE_DIM > *pCellPopulation)

virtual void	Visit (VertexBasedCellPopulation< SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellPopulationCountWriter (const std::string &rFileName)

virtual void	WriteHeader (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)

Public Member Functions inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
	AbstractCellBasedWriter (const std::string &rFileName)

virtual	~AbstractCellBasedWriter ()

void	CloseFile ()

virtual void	OpenOutputFile (OutputFileHandler &rOutputFileHandler)

void	OpenOutputFileForAppend (OutputFileHandler &rOutputFileHandler)

virtual void	WriteTimeStamp ()

virtual void	WriteNewline ()

void	SetFileName (std::string fileName)

std::string	GetFileName ()

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractCellBasedWriter< ELEMENT_DIM, SPACE_DIM >
std::string	mFileName

out_stream	mpOutStream

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >

A class written using the visitor pattern for writing the number of cells of each proliferative type to file.

The output file is called celltypes.dat by default.

Definition at line 49 of file CellProliferativeTypesCountWriter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::CellProliferativeTypesCountWriter ( )

Default constructor.

Definition at line 45 of file CellProliferativeTypesCountWriter.cpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

template<class Archive >

void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Serialize the object and its member variables.

Parameters

archive	the archive
version	the current version of this class

Definition at line 61 of file CellProliferativeTypesCountWriter.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( MeshBasedCellPopulation< ELEMENT_DIM, SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative type.

Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]

where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the MeshBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 65 of file CellProliferativeTypesCountWriter.cpp.

References PetscTools::AmMaster(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellProliferativeTypeCount().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( CaBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative type.

Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]

where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the CaBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 78 of file CellProliferativeTypesCountWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( NodeBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative type.

Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]

where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the NodeBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 84 of file CellProliferativeTypesCountWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( PottsBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative type.

Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]

where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the PottsBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 90 of file CellProliferativeTypesCountWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::Visit ( VertexBasedCellPopulation< SPACE_DIM > * pCellPopulation )

virtual

Visit the population and write the number of cells in the population that have each proliferative type.

Outputs a line of tab-separated values of the form: [num stem] [num transit] [num differentiated] [num default]

where [num stem] denotes the number of cells in the population that have a StemCellProliferativeType, and so on. These counts are computed through the cell population method GetCellProliferativeTypeCount().

This line is appended to the output written by AbstractCellBasedWriter, which is a single value [present simulation time], followed by a tab.

Parameters

pCellPopulation a pointer to the VertexBasedCellPopulation to visit.

Implements AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 96 of file CellProliferativeTypesCountWriter.cpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >::VisitAnyPopulation ( AbstractCellPopulation< SPACE_DIM, SPACE_DIM > * pCellPopulation )

A general method for writing to any population.

Parameters

pCellPopulation the population to write.

Definition at line 51 of file CellProliferativeTypesCountWriter.cpp.

References PetscTools::AmMaster(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetCellProliferativeTypeCount().

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

friend class boost::serialization::access

friend

Needed for serialization.

Definition at line 53 of file CellProliferativeTypesCountWriter.hpp.

The documentation for this class was generated from the following files:

cell_based/src/writers/population_count_writers/CellProliferativeTypesCountWriter.hpp
cell_based/src/writers/population_count_writers/CellProliferativeTypesCountWriter.cpp

Public Member Functions

Private Member Functions

Friends

Additional Inherited Members

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM> class CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class CellProliferativeTypesCountWriter< ELEMENT_DIM, SPACE_DIM >