BidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <BidomainNeumannSurfaceTermAssembler.hpp>

Inheritance diagram for BidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for BidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	BidomainNeumannSurfaceTermAssembler (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *pBoundaryConditions)
Public Member Functions inherited from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 2 >
	AbstractFeSurfaceIntegralAssembler (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > *pBoundaryConditions)
virtual	~AbstractFeSurfaceIntegralAssembler ()
void	ResetBoundaryConditionsContainer (BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > *pBoundaryConditions)
Public Member Functions inherited from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, false, NORMAL >
	AbstractFeAssemblerCommon ()
void	SetCurrentSolution (Vec currentSolution)
virtual	~AbstractFeAssemblerCommon ()
Public Member Functions inherited from AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
	AbstractFeAssemblerInterface ()
void	SetMatrixToAssemble (Mat &rMatToAssemble, bool zeroMatrixBeforeAssembly=true)
void	SetVectorToAssemble (Vec &rVecToAssemble, bool zeroVectorBeforeAssembly)
void	Assemble ()
void	AssembleMatrix ()
void	AssembleVector ()
virtual	~AbstractFeAssemblerInterface ()

Protected Member Functions
virtual c_vector< double, 2 *ELEMENT_DIM >	ComputeVectorSurfaceTerm (const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &rSurfaceElement, c_vector< double, ELEMENT_DIM > &rPhi, ChastePoint< SPACE_DIM > &rX)
Protected Member Functions inherited from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 2 >
virtual void	AssembleOnSurfaceElement (const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &rSurfaceElement, c_vector< double, PROBLEM_DIM *ELEMENT_DIM > &rBSurfElem)
void	DoAssemble ()
Protected Member Functions inherited from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, false, NORMAL >
virtual double	GetCurrentSolutionOrGuessValue (unsigned nodeIndex, unsigned indexOfUnknown)
virtual void	ResetInterpolatedQuantities ()
virtual void	IncrementInterpolatedQuantities (double phiI, const Node< SPACE_DIM > *pNode)
virtual void	IncrementInterpolatedGradientQuantities (const c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, unsigned phiIndex, const Node< SPACE_DIM > *pNode)

Additional Inherited Members
Protected Types inherited from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 2 >
typedef LinearBasisFunction < ELEMENT_DIM-1 >	SurfaceBasisFunction
Protected Attributes inherited from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 2 >
AbstractTetrahedralMesh < ELEMENT_DIM, SPACE_DIM > *	mpMesh
BoundaryConditionsContainer < ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > *	mpBoundaryConditions
GaussianQuadratureRule < ELEMENT_DIM-1 > *	mpSurfaceQuadRule
Protected Attributes inherited from AbstractFeAssemblerCommon< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, false, NORMAL >
ReplicatableVector	mCurrentSolutionOrGuessReplicated
Protected Attributes inherited from AbstractFeAssemblerInterface< CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX >
Vec	mVectorToAssemble
Mat	mMatrixToAssemble
bool	mAssembleMatrix
bool	mAssembleVector
bool	mZeroMatrixBeforeAssembly
bool	mZeroVectorBeforeAssembly
PetscInt	mOwnershipRangeLo
PetscInt	mOwnershipRangeHi

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class BidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM >

Assembler which sets up the surface integral integrals for the bidomain equations, assuming that the boundary conditions are written: div(sigma_i grad phi_i) . n = g1 and div(sigma_e grad phi_e) dot n = g2.

These are not 'natural' boundary conditions for the para-elliptic bidomain equations (natural BCs for the second

Hence we don't use the NaturalNeumannSurfaceTermAssembler and have a special class here. It means that any BCs specified for bidomain and put in a BoundaryConditionsContainer should be for div(sigma_i grad phi_i) . n and div(sigma_e grad phi_e) . n.

Definition at line 56 of file BidomainNeumannSurfaceTermAssembler.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

BidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM >::BidomainNeumannSurfaceTermAssembler ( AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *  pMesh, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 2 > *  pBoundaryConditions  )

inline

Constructor

Parameters

pMesh	The mesh
pBoundaryConditions	The boundary conditions container

Definition at line 83 of file BidomainNeumannSurfaceTermAssembler.hpp.

Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

c_vector< double, 2 *ELEMENT_DIM > BidomainNeumannSurfaceTermAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeVectorSurfaceTerm ( const BoundaryElement< ELEMENT_DIM-1, SPACE_DIM > &  rSurfaceElement, c_vector< double, ELEMENT_DIM > &  rPhi, ChastePoint< SPACE_DIM > &  rX  )

protectedvirtual

This method returns the vector to be added to full vector for a given Gauss point in BoundaryElement, ie, essentially the INTEGRAND in the boundary integral part of the definition of the vector. The arguments are the bases, x and current solution computed at the Gauss point.

Parameters

rSurfaceElement	the element which is being considered.
rPhi	The basis functions, rPhi(i) = phi_i, i=1..numBases
rX	The point in space

Returns

stencil vector

Reimplemented from AbstractFeSurfaceIntegralAssembler< ELEMENT_DIM, SPACE_DIM, 2 >.

Definition at line 93 of file BidomainNeumannSurfaceTermAssembler.hpp.

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The documentation for this class was generated from the following file:

• heart/src/solver/electrics/bidomain/BidomainNeumannSurfaceTermAssembler.hpp