Chaste  Release::3.4
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Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <Hdf5ToTxtConverter.hpp>

+ Inheritance diagram for Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >:
+ Collaboration diagram for Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions

 Hdf5ToTxtConverter (const FileFinder &rInputDirectory, const std::string &rFileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)
 
- Public Member Functions inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
 AbstractHdf5Converter (const FileFinder &rInputDirectory, const std::string &rFileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, const std::string &rSubdirectoryName, unsigned precision)
 
void WriteInfoFile ()
 
 ~AbstractHdf5Converter ()
 
std::string GetSubdirectory ()
 

Additional Inherited Members

- Protected Member Functions inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
bool MoveOntoNextDataset ()
 
- Protected Attributes inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
const FileFinder & mrH5Folder
 
boost::shared_ptr< Hdf5DataReader > mpReader
 
unsigned mNumVariables
 
std::string mFileBaseName
 
std::vector< std::string > mDatasetNames
 
unsigned mOpenDatasetIndex
 
AbstractTetrahedralMesh
< ELEMENT_DIM, SPACE_DIM > * 		mpMesh
 
OutputFileHandler * mpOutputFileHandler
 
std::string mRelativeSubdirectory
 
unsigned mPrecision
 

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >

This class converts from Hdf5 format to a .txt format that is readable by Matlab.

There is one output file per variable per timestep, giving the values of that variable at that time over each of the nodes.

Definition at line 49 of file Hdf5ToTxtConverter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
Hdf5ToTxtConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToTxtConverter ( const FileFinder &  rInputDirectory,
const std::string &  rFileBaseName,
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *  pMesh 
)

Constructor, which does the conversion and writes the .txt file.

Parameters
rInputDirectoryThe input directory, where the .h5 file has been written.
rFileBaseNameThe base name of the data file.
pMeshPointer to the mesh.

Definition at line 47 of file Hdf5ToTxtConverter.cpp.

References PetscTools::AmMaster(), DistributedVectorFactory::CreateVec(), PetscTools::Destroy(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetDistributedVectorFactory(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), ReplicatableVector::GetSize(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mNumVariables, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mRelativeSubdirectory, OutputFileHandler::OpenOutputFile(), and ReplicatableVector::ReplicatePetscVector().

The documentation for this class was generated from the following files: