ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM > Class Template Reference

#include <ParallelCellsGenerator.hpp>

Collaboration diagram for ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >:

Public Member Functions
void	GenerateParallelCells (std::string archivePath, std::vector< CellPtr > &cells, NodesOnlyMesh< DIM > &mesh, boost::shared_ptr< AbstractCellProperty > pCellProliferativeType=boost::shared_ptr< AbstractCellProperty >())

Private Member Functions
c_vector< double, 2 *DIM >	GetArchiveBoundingBox (std::string archivePath)

Friends
class	TestParallelCellsGenerator

Detailed Description

template<class CELL_CYCLE_MODEL, unsigned DIM>
class ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >

A helper class for generating a vector of cells and a NodesOnlyMesh from an archive file without loading all cells to memory on each processor.

Definition at line 50 of file ParallelCellsGenerator.hpp.

Member Function Documentation

template<class CELL_CYCLE_MODEL , unsigned DIM>

void ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GenerateParallelCells	(	std::string	archivePath,
		std::vector< CellPtr > &	cells,
		NodesOnlyMesh< DIM > &	mesh,
		boost::shared_ptr< AbstractCellProperty >	pCellProliferativeType = boost::shared_ptr<AbstractCellProperty>()
	)

Generate nodes and cells for a given decomposition of space, dictated by mesh.

Parameters

archivePath	the name of the file containing the cell locations
cells	a reference to an empty vector into which cells can be inserted.
mesh	a reference to the mesh that will store the nodes.
pCellProliferativeType	the proliferative type of the cells.

Definition at line 82 of file ParallelCellsGenerator.hpp.

References NodesOnlyMesh< SPACE_DIM >::AddNode(), NodesOnlyMesh< SPACE_DIM >::GetMaximumInteractionDistance(), NodesOnlyMesh< SPACE_DIM >::GetMaximumNodeIndex(), CellPropertyRegistry::Instance(), NodesOnlyMesh< SPACE_DIM >::IsOwned(), NodesOnlyMesh< SPACE_DIM >::ReMesh(), and NodesOnlyMesh< SPACE_DIM >::SetInitialBoxCollection().

template<class CELL_CYCLE_MODEL , unsigned DIM>

c_vector< double, 2 *DIM > ParallelCellsGenerator< CELL_CYCLE_MODEL, DIM >::GetArchiveBoundingBox ( std::string  archivePath )

private

Calculate the bounding box of all positions in the archive path.

Parameters

archivePath

the path to the cell location archive.

Returns

the bounding box in format [xmin, xmax...].

Definition at line 145 of file ParallelCellsGenerator.hpp.

References EXCEPTION.

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The documentation for this class was generated from the following file:

• cell_based/src/cell/ParallelCellsGenerator.hpp