#include <SimpleTargetAreaModifier.hpp>

Inheritance diagram for SimpleTargetAreaModifier< DIM >:

Collaboration diagram for SimpleTargetAreaModifier< DIM >:

Public Member Functions
	SimpleTargetAreaModifier ()

virtual	~SimpleTargetAreaModifier ()

virtual void	UpdateTargetAreaOfCell (const CellPtr pCell)

void	OutputSimulationModifierParameters (out_stream &rParamsFile)

Public Member Functions inherited from AbstractTargetAreaModifier< DIM >
	AbstractTargetAreaModifier ()

virtual	~AbstractTargetAreaModifier ()

virtual void	UpdateAtEndOfTimeStep (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

virtual void	SetupSolve (AbstractCellPopulation< DIM, DIM > &rCellPopulation, std::string outputDirectory)

double	GetReferenceTargetArea ()

void	SetReferenceTargetArea (double referenceTargetArea)

void	UpdateTargetAreas (AbstractCellPopulation< DIM, DIM > &rCellPopulation)

Public Member Functions inherited from AbstractCellBasedSimulationModifier< DIM, DIM >
	AbstractCellBasedSimulationModifier ()

virtual	~AbstractCellBasedSimulationModifier ()

virtual void	UpdateAtEndOfTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)

virtual void	UpdateAtEndOfOutputTimeStep (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)

virtual void	SetupSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation, std::string outputDirectory)

virtual void	UpdateAtEndOfSolve (AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > &rCellPopulation)

void	OutputSimulationModifierInfo (out_stream &rParamsFile)

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractTargetAreaModifier< DIM >
double	mReferenceTargetArea

Detailed Description

template<unsigned DIM>
class SimpleTargetAreaModifier< DIM >

A modifier class in which the target area property of each cell is updated. It is used to implement growth in vertex-based simulations.

Todo:: Improve class documentation by describing precisely how the target area depends on the cell's status

Definition at line 51 of file SimpleTargetAreaModifier.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

SimpleTargetAreaModifier< DIM >::SimpleTargetAreaModifier ( )

Default constructor.

Definition at line 39 of file SimpleTargetAreaModifier.cpp.

template<unsigned DIM>

SimpleTargetAreaModifier< DIM >::~SimpleTargetAreaModifier ( )

virtual

Destructor.

Definition at line 45 of file SimpleTargetAreaModifier.cpp.

Member Function Documentation

template<unsigned DIM>

void SimpleTargetAreaModifier< DIM >::OutputSimulationModifierParameters ( out_stream & rParamsFile )

virtual

Overridden OutputSimulationModifierParameters() method. Output any simulation modifier parameters to file.

Parameters

rParamsFile the file stream to which the parameters are output

Reimplemented from AbstractTargetAreaModifier< DIM >.

Definition at line 111 of file SimpleTargetAreaModifier.cpp.

References AbstractTargetAreaModifier< DIM >::OutputSimulationModifierParameters().

template<unsigned DIM>

template<class Archive >

void SimpleTargetAreaModifier< DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)

inlineprivate

Boost Serialization method for archiving/checkpointing. Archives the object and its member variables.

Parameters

archive	The boost archive.
version	The current version of this class.

Definition at line 63 of file SimpleTargetAreaModifier.hpp.

template<unsigned DIM>

void SimpleTargetAreaModifier< DIM >::UpdateTargetAreaOfCell ( const CellPtr pCell )

virtual

Overridden UpdateTargetAreaOfCell() method.

Parameters

pCell pointer to the cell

At division, daughter cells inherit the cell data array from the mother cell. Here, we assign the target area that we want daughter cells to have to cells that we know to divide in this time step.