#include <StochasticDurationCellCycleModel.hpp>

Inheritance diagram for StochasticDurationCellCycleModel:

Collaboration diagram for StochasticDurationCellCycleModel:

Public Member Functions
	StochasticDurationCellCycleModel ()

void	SetG1Duration ()

AbstractCellCycleModel *	CreateCellCycleModel ()

virtual void	OutputCellCycleModelParameters (out_stream &rParamsFile)

Public Member Functions inherited from AbstractSimpleCellCycleModel
	AbstractSimpleCellCycleModel ()

virtual	~AbstractSimpleCellCycleModel ()

virtual void	ResetForDivision ()

virtual void	UpdateCellCyclePhase ()

void	InitialiseDaughterCell ()

virtual void	Initialise ()

Public Member Functions inherited from AbstractCellCycleModel
	AbstractCellCycleModel ()

virtual	~AbstractCellCycleModel ()

void	SetCell (CellPtr pCell)

CellPtr	GetCell ()

virtual void	SetBirthTime (double birthTime)

void	SetDimension (unsigned dimension)

unsigned	GetDimension ()

double	GetBirthTime () const

double	GetAge ()

virtual bool	ReadyToDivide ()

CellCyclePhase	GetCurrentCellCyclePhase ()

virtual double	GetG1Duration ()

double	GetStemCellG1Duration ()

double	GetTransitCellG1Duration ()

double	GetSG2MDuration ()

virtual double	GetSDuration ()

virtual double	GetG2Duration ()

virtual double	GetMDuration ()

virtual void	SetStemCellG1Duration (double stemCellG1Duration)

virtual void	SetTransitCellG1Duration (double transitCellG1Duration)

void	SetSDuration (double sDuration)

void	SetG2Duration (double g2Duration)

void	SetMDuration (double mDuration)

virtual double	GetAverageTransitCellCycleTime ()

virtual double	GetAverageStemCellCycleTime ()

virtual bool	CanCellTerminallyDifferentiate ()

double	GetMinimumGapDuration ()

void	SetMinimumGapDuration (double minimumGapDuration)

void	OutputCellCycleModelInfo (out_stream &rParamsFile)

Public Member Functions inherited from Identifiable
virtual	~Identifiable ()

std::string	GetIdentifier () const

Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)

Friends
class	TestSimpleCellCycleModels

class	boost::serialization::access

Additional Inherited Members
Protected Attributes inherited from AbstractCellCycleModel
CellPtr	mpCell

double	mBirthTime

CellCyclePhase	mCurrentCellCyclePhase

double	mG1Duration

bool	mReadyToDivide

unsigned	mDimension

double	mMinimumGapDuration

double	mStemCellG1Duration

double	mTransitCellG1Duration

double	mSDuration

double	mG2Duration

double	mMDuration

Detailed Description

A stochastic cell-cycle model where cells divide with a stochastic G1 phase duration.

For proliferative cells, the G1 phase duration is drawn from a uniform distribution on [T, T+2], where the parameter T depends on cell proliferative type as follows: if the cell has StemCellProliferativeType, then T is given by GetStemCellG1Duration(); and if the cell has TransitCellProliferativeType, then T is given by GetTransitCellG1Duration().

If the cell has DifferentiatedCellProliferativeType, then the G1 phase duration is set to be infinite, so that the cell will never divide.

Definition at line 54 of file StochasticDurationCellCycleModel.hpp.

Constructor & Destructor Documentation

StochasticDurationCellCycleModel::StochasticDurationCellCycleModel ( )

Constructor - just a default, mBirthTime is now set in the AbstractCellCycleModel class. mG1Duration is set very high, it is set for the individual cells when InitialiseDaughterCell is called

Definition at line 42 of file StochasticDurationCellCycleModel.cpp.

Referenced by CreateCellCycleModel().