AbstractOdeSystem Class Reference

#include <AbstractOdeSystem.hpp>

Inheritance diagram for AbstractOdeSystem:

Collaboration diagram for AbstractOdeSystem:

List of all members.

Public Member Functions

AbstractOdeSystem (unsigned numberOfStateVariables=0)

virtual ~AbstractOdeSystem ()

virtual void EvaluateYDerivatives (double time, const std::vector< double > &rY, std::vector< double > &rDY)=0

unsigned GetNumberOfStateVariables () const

unsigned GetNumberOfParameters () const

double GetParameter (unsigned index) const

void SetParameter (unsigned index, double value)

const std::vector< std::string > & rGetParameterNames () const

const std::vector< std::string > & rGetParameterUnits () const

void SetInitialConditions (const std::vector< double > &rInitialConditions)

void SetInitialConditionsComponent (unsigned index, double initialCondition)

std::vector< double > GetInitialConditions () const

void SetStateVariables (const std::vector< double > &rStateVariables)

void SetStateVariable (unsigned stateVariable, double newValue)

std::vector< double > & rGetStateVariables ()

const std::vector< std::string > & rGetVariableNames () const

const std::vector< std::string > & rGetVariableUnits () const

virtual bool CalculateStoppingEvent (double time, const std::vector< double > &rY)

virtual double CalculateRootFunction (double time, const std::vector< double > &rY)

bool GetUseAnalyticJacobian ()

unsigned GetStateVariableNumberByName (const std::string name)

double GetStateVariableValueByNumber (unsigned varNumber) const

std::string GetStateVariableUnitsByNumber (unsigned varNumber) const

boost::shared_ptr< const
AbstractOdeSystemInformation > GetSystemInformation () const

Protected Member Functions

std::string DumpState (const std::string &rMessage, std::vector< double > Y=std::vector< double >())

Protected Attributes

unsigned mNumberOfStateVariables

std::vector< double > mStateVariables

std::vector< double > mParameters

boost::shared_ptr
< AbstractOdeSystemInformation > mpSystemInfo

bool mUseAnalyticJacobian

Private Member Functions

template<class Archive>

void serialize (Archive &archive, const unsigned int version)

Friends

class TestAbstractOdeSystem

class boost::serialization::access

Detailed Description

Abstract OdeSystem class.

Sets up variables and functions for a general ODE system.

ODE systems are specified primarily by the EvaluateYDerivatives method, which calculates the right-hand side of the system.

Instances can store their state internally in the mStateVariables vector (see GetNumberOfStateVariables, SetStateVariables and rGetStateVariables), although this is not essential - the vector may be empty, although in this case AbstractIvpOdeSolver::SolveAndUpdateStateVariable may not be used to solve the system.

ODE systems may also have a vector of parameters, which can be accessed through the GetParameter and SetParameter methods.

Information about what the parameters and state variables represent is provided by a subclass of AbstractOdeSystemInformation. Various wrapper methods (e.g. rGetVariableNames) are provided in this class to access this information.

There are two more advanced facilities available for subclass authors. An analytic form for the Jacobian matrix of the system may be provided, in which case you must subclass AbstractOdeSystemWithAnalyticJacobian. The GetUseAnalyticJacobian method will test whether this is the case.

Also, subclasses may define a condition at which ODE solvers should stop prematurely. For the Chaste solvers this is done by overriding CalculateStoppingEvent; if the more advanced CVODE solvers are being used then implement CalculateRootFunction instead to detect the stopping time more accurately.

Definition at line 77 of file AbstractOdeSystem.hpp.

Constructor & Destructor Documentation

AbstractOdeSystem::AbstractOdeSystem ( unsigned numberOfStateVariables = 0 )

Constructor.

Parameters:

numberOfStateVariables

the number of state variables in the ODE system (defaults to 0)

Definition at line 33 of file AbstractOdeSystem.cpp.

AbstractOdeSystem::~AbstractOdeSystem ( ) [virtual]

Virtual destructor since we have virtual methods.

Definition at line 39 of file AbstractOdeSystem.cpp.

Member Function Documentation

template<class Archive>

void AbstractOdeSystem::serialize	(	Archive &	archive,
		const unsigned int	version
	)			`[inline, private]`

Archive the member variables.

Parameters:

	archive	the archive
	version	the current version of this class

Todo:: archive mpSystemInfo

Reimplemented in AbstractBackwardEulerCardiacCell< SIZE >, AbstractCardiacCell, BackwardEulerFoxModel2002Modified, BackwardEulerLuoRudyIModel1991, LuoRudyIModel1991OdeSystem, AbstractBackwardEulerCardiacCell< 12 >, AbstractBackwardEulerCardiacCell< 1 >, and AbstractBackwardEulerCardiacCell< 3 >.

Definition at line 91 of file AbstractOdeSystem.hpp.

References mNumberOfStateVariables, mParameters, mStateVariables, and mUseAnalyticJacobian.

virtual void AbstractOdeSystem::EvaluateYDerivatives	(	double	time,
		const std::vector< double > &	rY,
		std::vector< double > &	rDY
	)			`[pure virtual]`

Method to evaluate the derivatives of the system.

Parameters:

	time	the current time
	rY	the current values of the state variables
	rDY	storage for the derivatives of the system; will be filled in on return

Implemented in AbstractBackwardEulerCardiacCell< SIZE >, DiFrancescoNoble1985OdeSystem, FakeBathCell, FitzHughNagumo1961OdeSystem, FoxModel2002Modified, HodgkinHuxleySquidAxon1952OriginalOdeSystem, LuoRudyIModel1991OdeSystem, Mahajan2008OdeSystem, NhsCellularMechanicsOdeSystem, TenTusscher2006OdeSystem, CombinedOdeSystem, IngeWntSwatCellCycleOdeSystem, TysonNovak2001OdeSystem, WntCellCycleOdeSystem, AbstractBackwardEulerCardiacCell< 12 >, AbstractBackwardEulerCardiacCell< 1 >, and AbstractBackwardEulerCardiacCell< 3 >.

Referenced by RungeKuttaFehlbergIvpOdeSolver::CalculateNextYValue(), RungeKutta4IvpOdeSolver::CalculateNextYValue(), RungeKutta2IvpOdeSolver::CalculateNextYValue(), EulerIvpOdeSolver::CalculateNextYValue(), and BackwardEulerIvpOdeSolver::ComputeResidual().

unsigned AbstractOdeSystem::GetNumberOfStateVariables ( ) const

Get the number of state variables in the ODE system.

Returns:: mNumberOfStateVariables

Definition at line 65 of file AbstractOdeSystem.cpp.

References mNumberOfStateVariables.

Referenced by RungeKuttaFehlbergIvpOdeSolver::CalculateNextYValue(), RungeKutta4IvpOdeSolver::CalculateNextYValue(), RungeKutta2IvpOdeSolver::CalculateNextYValue(), EulerIvpOdeSolver::CalculateNextYValue(), BackwardEulerIvpOdeSolver::CalculateNextYValue(), RungeKuttaFehlbergIvpOdeSolver::InternalSolve(), NhsSystemWithImplicitSolver::NhsSystemWithImplicitSolver(), RungeKuttaFehlbergIvpOdeSolver::Solve(), AbstractOneStepIvpOdeSolver::Solve(), AbstractIvpOdeSolver::SolveAndUpdateStateVariable(), and AbstractOdeBasedCellCycleModel::UpdateCellCyclePhase().

unsigned AbstractOdeSystem::GetNumberOfParameters ( ) const

Get the number of parameters.

Definition at line 71 of file AbstractOdeSystem.cpp.

References mParameters.

double AbstractOdeSystem::GetParameter ( unsigned index ) const

Get the value of a given parameter.

Parameters:

index

the index of the parameter

Definition at line 76 of file AbstractOdeSystem.cpp.

References mParameters.

void AbstractOdeSystem::SetParameter	(	unsigned	index,
		double	value
	)

Set the value of a given parameter.

Parameters:

	index	the index of the parameter
	value	the value

Definition at line 81 of file AbstractOdeSystem.cpp.

References mParameters.

const std::vector< std::string > & AbstractOdeSystem::rGetParameterNames ( ) const

Get the names of the parameters in the ODE system.

Definition at line 86 of file AbstractOdeSystem.cpp.

References mpSystemInfo.

const std::vector< std::string > & AbstractOdeSystem::rGetParameterUnits ( ) const

Get the units of the parameters in the ODE system.

Definition at line 92 of file AbstractOdeSystem.cpp.

References mpSystemInfo.

void AbstractOdeSystem::SetInitialConditions ( const std::vector< double > & rInitialConditions )

Set the initial conditions for the ODE system.

Parameters:

rInitialConditions

vector containing initial values for the state variables

Definition at line 99 of file AbstractOdeSystem.cpp.

References mNumberOfStateVariables, and mpSystemInfo.

void AbstractOdeSystem::SetInitialConditionsComponent	(	unsigned	index,
		double	initialCondition
	)

Set the initial condition one state variable.

Parameters:

	index	the index of the state variable in the system
	initialCondition	the initial value for the state variable

Definition at line 109 of file AbstractOdeSystem.cpp.

References mNumberOfStateVariables, and mpSystemInfo.

Referenced by IngeWntSwatCellCycleOdeSystem::IngeWntSwatCellCycleOdeSystem(), and WntCellCycleOdeSystem::WntCellCycleOdeSystem().

std::vector< double > AbstractOdeSystem::GetInitialConditions ( ) const

Get the initial conditions for the ODE system.

Definition at line 119 of file AbstractOdeSystem.cpp.

References mpSystemInfo.

Referenced by CombinedOdeSystem::CombinedOdeSystem(), AbstractCardiacCell::Init(), WntCellCycleModel::Initialise(), IngeWntSwatCellCycleModel::Initialise(), NhsCellularMechanicsOdeSystem::NhsCellularMechanicsOdeSystem(), TysonNovakCellCycleModel::ResetForDivision(), AbstractWntOdeBasedCellCycleModel::ResetForDivision(), and TysonNovakCellCycleModel::TysonNovakCellCycleModel().

void AbstractOdeSystem::SetStateVariables ( const std::vector< double > & rStateVariables )

Set the values of the state variables in the ODE system.

Parameters:

rStateVariables

vector containing values for the state variables

Definition at line 125 of file AbstractOdeSystem.cpp.

References mNumberOfStateVariables, and mStateVariables.

Referenced by CombinedOdeSystem::CombinedOdeSystem(), AbstractCardiacCell::Init(), WntCellCycleModel::Initialise(), IngeWntSwatCellCycleModel::Initialise(), NhsCellularMechanicsOdeSystem::NhsCellularMechanicsOdeSystem(), TysonNovakCellCycleModel::ResetForDivision(), AbstractOdeBasedCellCycleModel::SetProteinConcentrationsForTestsOnly(), and TysonNovakCellCycleModel::TysonNovakCellCycleModel().

void AbstractOdeSystem::SetStateVariable	(	unsigned	stateVariable,
		double	newValue
	)

Set the value of a single state variable in the ODE system.

Parameters:

	stateVariable	index of the state variable to be set
	newValue	new value of the state variable

Definition at line 134 of file AbstractOdeSystem.cpp.

References mNumberOfStateVariables, and mStateVariables.

std::vector< double > & AbstractOdeSystem::rGetStateVariables ( )

Get the values of the state variables in the ODE system.

Definition at line 144 of file AbstractOdeSystem.cpp.

References mStateVariables.

Referenced by WntCellCycleModel::ChangeCellTypeDueToCurrentBetaCateninLevel(), IngeWntSwatCellCycleModel::ChangeCellTypeDueToCurrentBetaCateninLevel(), AbstractCardiacCell::Compute(), AbstractBackwardEulerCardiacCell< SIZE >::Compute(), BackwardEulerLuoRudyIModel1991::ComputeJacobian(), BackwardEulerLuoRudyIModel1991::ComputeOneStepExceptVoltage(), BackwardEulerFoxModel2002Modified::ComputeOneStepExceptVoltage(), BackwardEulerLuoRudyIModel1991::ComputeResidual(), DumpState(), FakeBathCell::FakeBathCell(), IngeWntSwatCellCycleModel::GetCytoplasmicBetaCateninLevel(), Mahajan2008OdeSystem::GetIIonic(), FoxModel2002Modified::GetIIonic(), BackwardEulerFoxModel2002Modified::GetIIonic(), IngeWntSwatCellCycleModel::GetMembraneBoundBetaCateninLevel(), IngeWntSwatCellCycleModel::GetNuclearBetaCateninLevel(), AbstractOdeBasedCellCycleModel::GetProteinConcentrations(), AbstractCardiacCell::GetVoltage(), IngeWntSwatCellCycleModel::IngeWntSwatCellCycleModel(), TysonNovakCellCycleModel::ResetForDivision(), AbstractWntOdeBasedCellCycleModel::ResetForDivision(), AbstractOdeBasedCellCycleModel::serialize(), AbstractOdeBasedCellCycleModel::SetProteinConcentrationsForTestsOnly(), AbstractCardiacCell::SetVoltage(), AbstractIvpOdeSolver::SolveAndUpdateStateVariable(), WntCellCycleModel::SolveOdeToTime(), IngeWntSwatCellCycleModel::SolveOdeToTime(), AbstractOdeBasedCellCycleModel::UpdateCellCyclePhase(), BackwardEulerLuoRudyIModel1991::UpdateTransmembranePotential(), BackwardEulerFoxModel2002Modified::UpdateTransmembranePotential(), TenTusscher2006OdeSystem::VerifyStateVariables(), LuoRudyIModel1991OdeSystem::VerifyStateVariables(), DiFrancescoNoble1985OdeSystem::VerifyStateVariables(), BackwardEulerLuoRudyIModel1991::VerifyStateVariables(), WntCellCycleModel::WntCellCycleModel(), and CardiacElectroMechanicsProblem< DIM >::WriteWatchedLocationData().

const std::vector< std::string > & AbstractOdeSystem::rGetVariableNames ( ) const

Get the names of the state variables in the ODE system.

Definition at line 149 of file AbstractOdeSystem.cpp.

References mpSystemInfo.

Referenced by DumpState(), FoxModel2002Modified::EvaluateYDerivatives(), and OdeSolution::WriteToFile().

const std::vector< std::string > & AbstractOdeSystem::rGetVariableUnits ( ) const

Get the units of the state variables in the ODE system.

Definition at line 155 of file AbstractOdeSystem.cpp.

References mpSystemInfo.

Referenced by OdeSolution::WriteToFile().

bool AbstractOdeSystem::CalculateStoppingEvent	(	double	time,
		const std::vector< double > &	rY
	)			`[virtual]`

CalculateStoppingEvent() - can be overloaded if the ODE is to be solved only until a particular event (for example, only until the y value becomes negative.

After each timestep the solver will call this method on the ODE to see if it should stop there. By default, false is returned here.

Parameters:

	time	the current time
	rY	the current values of the state variables

Reimplemented in IngeWntSwatCellCycleOdeSystem, TysonNovak2001OdeSystem, and WntCellCycleOdeSystem.

Definition at line 42 of file AbstractOdeSystem.cpp.

Referenced by CalculateRootFunction(), RungeKuttaFehlbergIvpOdeSolver::InternalSolve(), AbstractOneStepIvpOdeSolver::InternalSolve(), RungeKuttaFehlbergIvpOdeSolver::Solve(), and AbstractOneStepIvpOdeSolver::Solve().

double AbstractOdeSystem::CalculateRootFunction	(	double	time,
		const std::vector< double > &	rY
	)			`[virtual]`

An alternative approach to stopping events; currently only useful with CVODE. CVODE can search for roots (zeros) of this function while solving the ODE system, and home in on them to find sign transitions to high precision.

The default implementation here fakes a root function using CalculateStoppingEvent.

Parameters:

	time	the current time
	rY	the current values of the state variables

Reimplemented in IngeWntSwatCellCycleOdeSystem, TysonNovak2001OdeSystem, and WntCellCycleOdeSystem.

Definition at line 167 of file AbstractOdeSystem.cpp.

References CalculateStoppingEvent().

bool AbstractOdeSystem::GetUseAnalyticJacobian ( )

Get whether an analytic Jacobian is used.

Returns:: mUseAnalyticJacobian

Definition at line 173 of file AbstractOdeSystem.cpp.

References mUseAnalyticJacobian.

Referenced by BackwardEulerIvpOdeSolver::ComputeJacobian().

unsigned AbstractOdeSystem::GetStateVariableNumberByName ( const std::string name )

This method is used to establish a state variable's position within the vector of state variables of an ODE system. This number can then be used with the methods GetStateVariableValueByNumber and GetStateVariableUnitsByNumber.

Parameters:

name

the name of a state variable.

Returns:: the state variable's position within the vector of state variables associated with the ODE system.

Definition at line 178 of file AbstractOdeSystem.cpp.

References mpSystemInfo.

double AbstractOdeSystem::GetStateVariableValueByNumber ( unsigned varNumber ) const

Get the value of a state variable given its index in the ODE system.

Parameters:

varNumber

a state variable's position within the vector of state variables associated with the ODE system.

Returns:: the current value of the state variable.

Definition at line 184 of file AbstractOdeSystem.cpp.

References mNumberOfStateVariables, and mStateVariables.

std::string AbstractOdeSystem::GetStateVariableUnitsByNumber ( unsigned varNumber ) const

Get the units of a state variable given its index in the ODE system.

Parameters:

varNumber

a state variable's position within the vector of state variables associated with the ODE system.

Returns:: the units of the state variable.

Definition at line 190 of file AbstractOdeSystem.cpp.

References mNumberOfStateVariables, and mpSystemInfo.

boost::shared_ptr< const AbstractOdeSystemInformation > AbstractOdeSystem::GetSystemInformation ( ) const

Get the object which provides information about this ODE system.

Definition at line 161 of file AbstractOdeSystem.cpp.

References mpSystemInfo.

std::string AbstractOdeSystem::DumpState	(	const std::string &	rMessage,
		std::vector< double >	Y = `std::vector<double>()`
	)			`[protected]`

Used to include extra debugging information in exception messages. For example, EXCEPTION(DumpState("Gating variable out of range"));

Parameters:

	rMessage	the exception message
	Y	the values of the state variables (optional input argument)

Definition at line 47 of file AbstractOdeSystem.cpp.

References rGetStateVariables(), and rGetVariableNames().

Referenced by FoxModel2002Modified::EvaluateYDerivatives(), TenTusscher2006OdeSystem::VerifyStateVariables(), LuoRudyIModel1991OdeSystem::VerifyStateVariables(), and DiFrancescoNoble1985OdeSystem::VerifyStateVariables().

Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented in AbstractBackwardEulerCardiacCell< SIZE >, AbstractCardiacCell, BackwardEulerFoxModel2002Modified, BackwardEulerLuoRudyIModel1991, LuoRudyIModel1991OdeSystem, AbstractBackwardEulerCardiacCell< 12 >, AbstractBackwardEulerCardiacCell< 1 >, and AbstractBackwardEulerCardiacCell< 3 >.

Definition at line 82 of file AbstractOdeSystem.hpp.

Member Data Documentation

unsigned AbstractOdeSystem::mNumberOfStateVariables [protected]

The number of state variables in the ODE system.

Definition at line 105 of file AbstractOdeSystem.hpp.

Referenced by AbstractCardiacCell::AbstractCardiacCell(), CombinedOdeSystem::CombinedOdeSystem(), GetNumberOfStateVariables(), GetStateVariableUnitsByNumber(), GetStateVariableValueByNumber(), serialize(), SetInitialConditions(), SetInitialConditionsComponent(), SetStateVariable(), and SetStateVariables().

std::vector<double> AbstractOdeSystem::mStateVariables [protected]

Vector containing the current values of the state variables.

Definition at line 108 of file AbstractOdeSystem.hpp.

Referenced by NhsCellularMechanicsOdeSystem::GetActiveTension(), NhsCellularMechanicsOdeSystem::GetCalciumTroponinValue(), TenTusscher2006OdeSystem::GetIIonic(), LuoRudyIModel1991OdeSystem::GetIIonic(), HodgkinHuxleySquidAxon1952OriginalOdeSystem::GetIIonic(), FitzHughNagumo1961OdeSystem::GetIIonic(), DiFrancescoNoble1985OdeSystem::GetIIonic(), BackwardEulerLuoRudyIModel1991::GetIIonic(), LuoRudyIModel1991OdeSystem::GetIntracellularCalciumConcentration(), BackwardEulerLuoRudyIModel1991::GetIntracellularCalciumConcentration(), GetStateVariableValueByNumber(), rGetStateVariables(), serialize(), SetStateVariable(), SetStateVariables(), NhsSystemWithImplicitSolver::SolveDoNotUpdate(), and NhsSystemWithImplicitSolver::UpdateStateVariables().

std::vector<double> AbstractOdeSystem::mParameters [protected]

Vector containing parameters.

Definition at line 111 of file AbstractOdeSystem.hpp.

Referenced by GetNumberOfParameters(), GetParameter(), serialize(), and SetParameter().

boost::shared_ptr<AbstractOdeSystemInformation> AbstractOdeSystem::mpSystemInfo [protected]

Information about the concrete ODE system class.

Subclasses need to set this in their constructor to point to an instance of a suitable class. See for example the OdeSystemInformation class.

Definition at line 119 of file AbstractOdeSystem.hpp.

Referenced by BackwardEulerFoxModel2002Modified::BackwardEulerFoxModel2002Modified(), CombinedOdeSystem::CombinedOdeSystem(), DiFrancescoNoble1985OdeSystem::DiFrancescoNoble1985OdeSystem(), FakeBathCell::FakeBathCell(), FitzHughNagumo1961OdeSystem::FitzHughNagumo1961OdeSystem(), GetInitialConditions(), GetStateVariableNumberByName(), GetStateVariableUnitsByNumber(), GetSystemInformation(), HodgkinHuxleySquidAxon1952OriginalOdeSystem::HodgkinHuxleySquidAxon1952OriginalOdeSystem(), IngeWntSwatCellCycleOdeSystem::IngeWntSwatCellCycleOdeSystem(), BackwardEulerLuoRudyIModel1991::Init(), LuoRudyIModel1991OdeSystem::LuoRudyIModel1991OdeSystem(), Mahajan2008OdeSystem::Mahajan2008OdeSystem(), NhsCellularMechanicsOdeSystem::NhsCellularMechanicsOdeSystem(), rGetParameterNames(), rGetParameterUnits(), rGetVariableNames(), rGetVariableUnits(), SetInitialConditions(), SetInitialConditionsComponent(), TenTusscher2006OdeSystem::TenTusscher2006OdeSystem(), TysonNovak2001OdeSystem::TysonNovak2001OdeSystem(), and WntCellCycleOdeSystem::WntCellCycleOdeSystem().

bool AbstractOdeSystem::mUseAnalyticJacobian [protected]

Whether to use an analytic Jacobian.

Definition at line 122 of file AbstractOdeSystem.hpp.

Referenced by AbstractOdeSystemWithAnalyticJacobian::AbstractOdeSystemWithAnalyticJacobian(), GetUseAnalyticJacobian(), and serialize().

The documentation for this class was generated from the following files:

/tmp/release_1.1/ode/src/common/AbstractOdeSystem.hpp
/tmp/release_1.1/ode/src/common/AbstractOdeSystem.cpp


Public Member Functions
	AbstractOdeSystem (unsigned numberOfStateVariables=0)
virtual	~AbstractOdeSystem ()
virtual void	EvaluateYDerivatives (double time, const std::vector< double > &rY, std::vector< double > &rDY)=0
unsigned	GetNumberOfStateVariables () const
unsigned	GetNumberOfParameters () const
double	GetParameter (unsigned index) const
void	SetParameter (unsigned index, double value)
const std::vector< std::string > &	rGetParameterNames () const
const std::vector< std::string > &	rGetParameterUnits () const
void	SetInitialConditions (const std::vector< double > &rInitialConditions)
void	SetInitialConditionsComponent (unsigned index, double initialCondition)
std::vector< double >	GetInitialConditions () const
void	SetStateVariables (const std::vector< double > &rStateVariables)
void	SetStateVariable (unsigned stateVariable, double newValue)
std::vector< double > &	rGetStateVariables ()
const std::vector< std::string > &	rGetVariableNames () const
const std::vector< std::string > &	rGetVariableUnits () const
virtual bool	CalculateStoppingEvent (double time, const std::vector< double > &rY)
virtual double	CalculateRootFunction (double time, const std::vector< double > &rY)
bool	GetUseAnalyticJacobian ()
unsigned	GetStateVariableNumberByName (const std::string name)
double	GetStateVariableValueByNumber (unsigned varNumber) const
std::string	GetStateVariableUnitsByNumber (unsigned varNumber) const
boost::shared_ptr< const AbstractOdeSystemInformation >	GetSystemInformation () const
Protected Member Functions
std::string	DumpState (const std::string &rMessage, std::vector< double > Y=std::vector< double >())
Protected Attributes
unsigned	mNumberOfStateVariables
std::vector< double >	mStateVariables
std::vector< double >	mParameters
boost::shared_ptr < AbstractOdeSystemInformation >	mpSystemInfo
bool	mUseAnalyticJacobian
Private Member Functions
template<class Archive>
void	serialize (Archive &archive, const unsigned int version)
Friends
class	TestAbstractOdeSystem
class	boost::serialization::access