Here is a list of all documented class members with links to the class documentation for each member:
- RadialSloughingCellKiller()
: RadialSloughingCellKiller
- RampedQuarterStimulusCellFactory()
: RampedQuarterStimulusCellFactory< CELL, DIM >
- randMod()
: RandomNumberGenerator
- RandomCellKiller()
: RandomCellKiller< DIM >
- RandomNumberGenerator()
: RandomNumberGenerator
- ranf()
: RandomNumberGenerator
- ReadColumnFromFile()
: ColumnDataReader
- ReadFile()
: HeartConfig
- ReadFileToDomDocument()
: XmlTools
- ReadHeaders()
: TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
- ReadNodesPerProcessorFile()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- ReadNumLinesOfDataFromFile()
: FibreReader< DIM >
- ReadParametersFromFile()
: CardiacSimulation
- ReadPetscObject()
: PetscTools
- ReadValueFromFile()
: ColumnDataReader
- ReadyToDivide()
: Cell
, AbstractCellCycleModel
- ReallocateMemory()
: CellwiseData< DIM >
- ReconstructCylindricalMesh()
: Cylindrical2dMesh
- RefineElement()
: MutableMesh< ELEMENT_DIM, SPACE_DIM >
- RefreshJacobian()
: AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
- RefreshJacobianCachedData()
: NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- RefreshMesh()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
, TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- RegenerateTables()
: AbstractLookupTableCollection
- RegisterBoundaryElement()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- RegisterElement()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- RegisterHaloNode()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- RegisterNode()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- RegisterWithNodes()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
, BoundaryElement< ELEMENT_DIM, SPACE_DIM >
, Element< ELEMENT_DIM, SPACE_DIM >
, VertexElement< ELEMENT_DIM, SPACE_DIM >
, VertexElement< 1, SPACE_DIM >
- RegularStimulus()
: RegularStimulus
- RegularStimulusZeroNetCharge()
: RegularStimulusZeroNetCharge
- ReIndex()
: MutableMesh< ELEMENT_DIM, SPACE_DIM >
- RelativeConvergenceCriterion
: AbstractUntemplatedConvergenceTester
- ReMesh()
: MutableMesh< ELEMENT_DIM, SPACE_DIM >
, MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
, Cylindrical2dMesh
- RemoveBoundaryElement()
: Node< SPACE_DIM >
- RemoveCellProperty()
: Cell
- RemoveDeadCells()
: AbstractCellPopulation< DIM >
, MeshBasedCellPopulation< DIM >
, NodeBasedCellPopulation< DIM >
, VertexBasedCellPopulation< DIM >
- RemoveDeletedNodes()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- RemoveDeletedNodesAndElements()
: MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
- RemoveElement()
: Node< SPACE_DIM >
- RemoveNode()
: Box< DIM >
- RemoveNullSpace()
: LinearSystem
- RemovePetscContext()
: ReplicatableVector
- RemoveProperty()
: CellPropertyCollection
- ReorderNodes()
: DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
- ReplaceNode()
: AbstractElement< ELEMENT_DIM, SPACE_DIM >
- ReplicatableVector()
: ReplicatableVector
- Replicate()
: ReplicatableVector
- ReplicateBool()
: PetscTools
- ReplicateCaches()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- ReplicateException()
: PetscTools
- ReplicatePetscVector()
: ReplicatableVector
- Report()
: GenericEventHandler< NUM_EVENTS, CONCRETE >
- RescaleMeshFromBoundaryNode()
: MutableMesh< ELEMENT_DIM, SPACE_DIM >
- Reseed()
: RandomNumberGenerator
- Reset()
: HeartConfig
, GenericEventHandler< NUM_EVENTS, CONCRETE >
, Timer
, AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
, GenericMeshReader< ELEMENT_DIM, SPACE_DIM >
, TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
, VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
, VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
, AbstractCellCycleModelOdeSolver
, CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
- ResetBoundaryConditionsContainer()
: AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
- ResetCache()
: PetscTools
- ResetDirichletCommunication()
: AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- ResetEndTimeAndNumberOfTimeSteps()
: SimulationTime
- ResetForDivision()
: AbstractCellCycleModel
, AbstractOdeBasedCellCycleModel
, AbstractSimpleCellCycleModel
, AbstractSimpleGenerationBasedCellCycleModel
, Alarcon2004OxygenBasedCellCycleModel
, StochasticOxygenBasedCellCycleModel
, TysonNovakCellCycleModel
, AbstractWntOdeBasedCellCycleModel
, StochasticWntCellCycleModel
- ResetIndex()
: BoundaryElement< ELEMENT_DIM, SPACE_DIM >
, Element< ELEMENT_DIM, SPACE_DIM >
, VertexElement< ELEMENT_DIM, SPACE_DIM >
, VertexElement< 1, SPACE_DIM >
- ResetInterpolatedQuantities()
: AbstractCorrectionTermAssembler< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
, BidomainAssembler< ELEMENT_DIM, SPACE_DIM >
, MonodomainAssembler< ELEMENT_DIM, SPACE_DIM >
, AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
, CellBasedSimulationWithPdesAssembler< DIM >
- ResetKspSolver()
: LinearSystem
- ResetMaxCellId()
: Cell
- ResetStatisticsVariables()
: FineCoarseMeshPair< DIM >
- ResetTimeStep()
: TimeStepper
- ResetToIdentity()
: NodeMap
, VertexElementMap
- ResetToInitialConditions()
: AbstractCardiacCell
, AbstractCardiacCellInterface
, AbstractCvodeCell
- Resize()
: ReplicatableVector
, NodeMap
, VertexElementMap
- Restore()
: DistributedVector
- rGetAllCellProperties()
: CellPropertyRegistry
- rGetBathIdentifiers()
: HeartConfig
- rGetBox()
: BoxCollection< DIM >
- rGetCellCyclePhaseCount()
: AbstractCellPopulation< DIM >
- rGetCellPopulation()
: CellBasedSimulation< DIM >
, CellwiseData< DIM >
- rGetCellProliferativeTypeCount()
: AbstractCellPopulation< DIM >
- rGetCellPropertyCollection()
: Cell
- rGetCells()
: AbstractCellPopulation< DIM >
- rGetCellsDistributed()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- rGetCentre()
: ChasteEllipsoid< SPACE_DIM >
- rGetCoarseElementsForFineElementCentroids()
: FineCoarseMeshPair< DIM >
- rGetCoarseElementsForFineNodes()
: FineCoarseMeshPair< DIM >
- rGetConstStateVariables()
: AbstractOdeSystem
- rGetContainingBoundaryElementIndices()
: Node< SPACE_DIM >
- rGetContainingElementIndices()
: Node< SPACE_DIM >
- rGetCurrentSolution()
: AbstractNonlinearElasticitySolver< COMPRESSIBILITY_TYPE, DIM >
- rGetData()
: FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
- rGetDeformedPosition()
: AbstractNonlinearElasticitySolver< COMPRESSIBILITY_TYPE, DIM >
, CardiacElectroMechanicsProblem< DIM >
- rGetDerivedQuantities()
: OdeSolution
- rGetDerivedQuantityNames()
: AbstractOdeSystemInformation
, AbstractParameterisedSystem< VECTOR >
- rGetDerivedQuantityUnits()
: AbstractOdeSystemInformation
, AbstractParameterisedSystem< VECTOR >
- rGetDirichletBoundaryConditionsVector()
: LinearSystem
- rGetDistanceMapEndocardium()
: HeartGeometryInformation< SPACE_DIM >
- rGetDistanceMapEpicardium()
: HeartGeometryInformation< SPACE_DIM >
- rGetDistanceMapLeftVentricle()
: HeartGeometryInformation< SPACE_DIM >
- rGetDistanceMapRightVentricle()
: HeartGeometryInformation< SPACE_DIM >
- rGetElementsAndWeights()
: FineCoarseMeshPair< DIM >
- rGetElementsContained()
: Box< DIM >
- rGetExtracellularConductivityTensor()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
, BidomainTissue< SPACE_DIM >
- rGetFibreStretches()
: ImplicitCardiacMechanicsSolver< DIM >
- rGetGhostNodes()
: MeshBasedCellPopulationWithGhostNodes< DIM >
- rGetGlobalLows()
: DistributedVectorFactory
- rGetGradient()
: CellwiseDataGradient< DIM >
- rGetIionicCacheReplicated()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- rGetIntracellularConductivityTensor()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- rGetIntracellularStimulusCacheReplicated()
: AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
- rGetLayerForEachNode()
: HeartGeometryInformation< SPACE_DIM >
- rGetLhsMatrix()
: LinearSystem
- rGetLocation()
: Node< SPACE_DIM >
, ChastePoint< DIM >
- rGetLowerCorner()
: ChasteCuboid< SPACE_DIM >
- rGetMesh()
: VertexBasedCellPopulation< DIM >
, MeshBasedCellPopulation< DIM >
, VertexBasedCellPopulation< DIM >
, AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
- rGetMinAndMaxValues()
: Box< DIM >
- rGetModifiableLocation()
: Node< SPACE_DIM >
- rGetModifiedConductivityTensor()
: CardiacElectroMechanicsProblem< DIM >
, AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM >
- rGetNodeAttributes()
: Node< SPACE_DIM >
- rGetNodePairs()
: NodeBasedCellPopulation< DIM >
- rGetNodePermutation()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- rGetNodes()
: NodeBasedCellPopulation< DIM >
- rGetNodesContained()
: Box< DIM >
- rGetNodesList()
: ChasteNodesList< SPACE_DIM >
- rGetNodesOnEndoSurface()
: HeartGeometryInformation< SPACE_DIM >
- rGetNodesOnEpiSurface()
: HeartGeometryInformation< SPACE_DIM >
- rGetNodesOnLVSurface()
: HeartGeometryInformation< SPACE_DIM >
- rGetNodesOnRVSurface()
: HeartGeometryInformation< SPACE_DIM >
- rGetNormalToPlane()
: PlaneBasedCellKiller< DIM >
, PlaneBoundaryCondition< DIM >
- rGetParameterNames()
: AbstractParameterisedSystem< VECTOR >
, AbstractOdeSystemInformation
- rGetParameters()
: OdeSolution
- rGetParameterUnits()
: AbstractParameterisedSystem< VECTOR >
, AbstractOdeSystemInformation
- rGetPointOnPlane()
: PlaneBasedCellKiller< DIM >
, PlaneBoundaryCondition< DIM >
- rGetPrecondMatrix()
: LinearSystem
- rGetPressures()
: NonlinearElasticitySolver< DIM >
- rGetQuadPoint()
: GaussianQuadratureRule< ELEMENT_DIM >
- rGetRadii()
: ChasteEllipsoid< SPACE_DIM >
- rGetRhsVector()
: LinearSystem
- rGetSolutions()
: OdeSolution
- rGetStateVariableNames()
: AbstractOdeSystemInformation
, AbstractParameterisedSystem< VECTOR >
- rGetStateVariables()
: AbstractParameterisedSystem< VECTOR >
- rGetStateVariableUnits()
: AbstractParameterisedSystem< VECTOR >
, AbstractOdeSystemInformation
- rGetTimes()
: OdeSolution
- rGetTissueIdentifiers()
: HeartConfig
- rGetUpperCorner()
: ChasteCuboid< SPACE_DIM >
- RIGHT_SEPTUM
: HeartGeometryInformation< SPACE_DIM >
- RIGHT_SEPTUM_SIZE
: HeartGeometryInformation< SPACE_DIM >
- RIGHT_VENTRICLE_SURFACE
: HeartGeometryInformation< SPACE_DIM >
- RIGHT_VENTRICLE_WALL
: HeartGeometryInformation< SPACE_DIM >
- Rotate()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- RotateX()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- RotateY()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- RotateZ()
: AbstractMesh< ELEMENT_DIM, SPACE_DIM >
- Run()
: CardiacSimulation
- RunAndUpdate()
: AbstractContractionModel
, NhsModelWithBackwardSolver
, AbstractOdeBasedContractionModel
, AbstractAlgebraicContractionModel
- RunDoNotUpdate()
: AbstractContractionModel
, AbstractOdeBasedContractionModel
, NhsModelWithBackwardSolver
, AbstractAlgebraicContractionModel
- RungeKutta2IvpOdeSolver()
: RungeKutta2IvpOdeSolver
- RungeKuttaFehlbergIvpOdeSolver()
: RungeKuttaFehlbergIvpOdeSolver