BuskeAdhesiveForce< DIM > Class Template Reference

#include <BuskeAdhesiveForce.hpp>

Inheritance diagram for BuskeAdhesiveForce< DIM >:

Collaboration diagram for BuskeAdhesiveForce< DIM >:

List of all members.

Public Member Functions
	BuskeAdhesiveForce ()
double	GetAdhesionEnergyParameter ()
void	SetAdhesionEnergyParameter (double adhesionEnergyParameter)
c_vector< double, DIM >	CalculateForceBetweenNodes (unsigned nodeAGlobalIndex, unsigned nodeBGlobalIndex, AbstractCellPopulation< DIM > &rCellPopulation)
double	GetMagnitudeOfForce (double distanceBetweenNodes, double radiusOfCellOne, double radiusOfCellTwo)
virtual void	OutputForceParameters (out_stream &rParamsFile)
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
Private Attributes
double	mAdhesionEnergyParameter
Friends
class	TestForcesNotForRelease
class	boost::serialization::access

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Detailed Description

template<unsigned DIM>
class BuskeAdhesiveForce< DIM >

A force law employed by Buske et al (2011) in their overlapping spheres model of the intestinal crypt (doi:10.1371/journal.pcbi.1001045).

Length is scaled by natural length.

Todo:

does this mean natural radius of a cell? If so at what age? (#1764) Time is in hours.

Definition at line 52 of file BuskeAdhesiveForce.hpp.

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Constructor & Destructor Documentation

template<unsigned DIM>

BuskeAdhesiveForce< DIM >::BuskeAdhesiveForce

(

)

Constructor.

Definition at line 39 of file BuskeAdhesiveForce.cpp.

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Member Function Documentation

template<unsigned DIM>

c_vector< double, DIM > BuskeAdhesiveForce< DIM >::CalculateForceBetweenNodes	(	unsigned	nodeAGlobalIndex,
		unsigned	nodeBGlobalIndex,
		AbstractCellPopulation< DIM > &	rCellPopulation
	)

Calculate the force between two nodes.

Note that this assumes they are connected and is called by rCalculateVelocitiesOfEachNode()

Parameters:

nodeAGlobalIndex	index of one neighbouring node
nodeBGlobalIndex	index of the other neighbouring node
rCellPopulation	the cell population

Definition at line 58 of file BuskeAdhesiveForce.cpp.

References NodesOnlyMesh< SPACE_DIM >::GetCellRadius(), and AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >::GetNode().

template<unsigned DIM>

double BuskeAdhesiveForce< DIM >::GetAdhesionEnergyParameter

(

)

Get mAdhesionEnergyParameter.

Definition at line 46 of file BuskeAdhesiveForce.cpp.

template<unsigned DIM>

double BuskeAdhesiveForce< DIM >::GetMagnitudeOfForce	(	double	distanceBetweenNodes,
		double	radiusOfCellOne,
		double	radiusOfCellTwo
	)

Calculate the magnitude of the force between two nodes that are a given distance apart and are associated with given cell radii.

Parameters:

distanceBetweenNodes	the distance between two nodes
radiusOfCellOne	radius of a cell
radiusOfCellTwo	radius of a cell

Definition at line 106 of file BuskeAdhesiveForce.cpp.

template<unsigned DIM>

void BuskeAdhesiveForce< DIM >::OutputForceParameters

(

out_stream &

rParamsFile

)

[virtual]

Overridden OutputForceParameters() method.

Parameters:

rParamsFile

the file stream to which the parameters are output

Reimplemented from AbstractTwoBodyInteractionForce< DIM >.

Definition at line 123 of file BuskeAdhesiveForce.cpp.

References AbstractTwoBodyInteractionForce< ELEMENT_DIM, SPACE_DIM >::OutputForceParameters().

template<unsigned DIM>

template<class Archive >

void BuskeAdhesiveForce< DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)		[inline, private]

Archive the object and its member variables.

Parameters:

archive	the archive
version	the current version of this class

Reimplemented from AbstractTwoBodyInteractionForce< DIM >.

Definition at line 66 of file BuskeAdhesiveForce.hpp.

References BuskeAdhesiveForce< DIM >::mAdhesionEnergyParameter.

template<unsigned DIM>

void BuskeAdhesiveForce< DIM >::SetAdhesionEnergyParameter

(

double

adhesionEnergyParameter

)

Set mAdhesionEnergyParameter.

Parameters:

adhesionEnergyParameter

the new value of mAdhesionEnergyParameter

Definition at line 52 of file BuskeAdhesiveForce.cpp.

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Friends And Related Function Documentation

template<unsigned DIM>

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractTwoBodyInteractionForce< DIM >.

Definition at line 58 of file BuskeAdhesiveForce.hpp.

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Member Data Documentation

template<unsigned DIM>

double BuskeAdhesiveForce< DIM >::mAdhesionEnergyParameter [private]

Adhesion energy parameter.

Represented by the parameter epsilon in the model by Buske et al (2011) in their off-lattice model of the intestinal crypt (doi:10.1371/journal.pcbi.1001045).

Definition at line 79 of file BuskeAdhesiveForce.hpp.

Referenced by BuskeAdhesiveForce< DIM >::serialize().

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The documentation for this class was generated from the following files:

• cell_based/src/population/mechanics/BuskeAdhesiveForce.hpp
• cell_based/src/population/mechanics/BuskeAdhesiveForce.cpp