- Generated on Mon Nov 5 2012 12:47:34 for Chaste by
1.7.4
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Chaste Release::3.1
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: block preconditioners only make sense in Bidomain... Add some warning/error message
: #1082 only works if you know about the whole mesh.
#1317 code for saving/loading mSolution is PROBLEM_DIM specific, move it into the save/load methods fo Mono and BidomainProblem
#1317 is there a reason we can't use PETSc's load/save vector functionality?
#1317 code for saving/loading mSolution is PROBLEM_DIM specific, move it into the save/load methods for Mono and BidomainProblem
#1369
#1316 Create a class defining constant tensors to be used when no fibre orientation is provided.
#1316 Create a class defining constant tensors to be used when no fibre orientation is provided.
This is a scarily long method; could do with some parts extracted?
consider reducing all stimuli to match this one.
remove magic number? (#1884)
#2057 Make better choices here...
#2057 Make better choices..
#1322 Mesh should really be const!
#1322 Mesh should be const
#1322 This should be const too
#1322, This should be const too
enable this (#1891)
enable the coarse PDE mesh to change size, e.g. for a growing domain (#630/#1891)
enable this in the case where a coarse PDE mesh is used
Worry about round-off errors (#1891)
#2066 return the time step (mDt) defined in the calculation of the probability of a cell moving to a certain site
#2066 define the time step (dt) defined in the calculation of the probability of a cell moving to a certain site
#1930 We should use a reader set iterator for this bit now.
#1730 and we should be able to combine ASCII branch
#1930 We should use a reader set iterator for this bit now.
#1289 assert the node is not considered both owned and halo-owned.
#1957 causes segfaults
#1957 remove when unloading working
: #1361 ComputeContainingElements and related methods, and methods called by that down to here, should really take in const c_vector& rather than ChastePoints.
#1326 This method shouldn't need a new Jacobian inverse for every Xi
The useMeshWidth is temporary, while we are sorting out 3D stimulus. It is to be removed later (along with StimulusConvergenceTester) scale stimulus depending on space_step of elements
It looks like the value of the stimulus is specific to 3D
- do we assume the vectors are initially empty? The returned std::vectors are all of the same length
There is no set method
- do we assume the vectors are initially empty? The returned std::vectors are all of the same length
When this is implemented, then we require an example in ChasteParametersFullFormat.xml
- do we assume the vectors are initially empty? The returned std::vectors are all of the same length
There is no set method
: #1082 is this the way of defining a null pointer as the default value of pBathNodes?
: #1082 use a single pointer to abstract class
: #1082 use a single pointer to abstract class
: #1082 use a single pointer to abstract class
never tested in linalg component
Should it be compulsory for the caller to supply this and manage the memory?
#1695 Store this number in a member variable.
#2032 Compare with MeshBasedCellPopulation::WriteVtkResultsToFile etc.
#2032 Add CellData
This method currently assumes SPACE_DIM = 2 (see #866)
use iterators to tidy this up
This method currently assumes SPACE_DIM = 2 (see #866)
this could be more efficient
This method currently assumes SPACE_DIM = 2 (see #866)
or should we move a and b apart, it may interfere with neighbouring edges? (see #1399)
This method currently assumes SPACE_DIM = 2 (see #866)
remove magic number? (#1884)
(#1930) Should this be stronger?
#1216 change the number 54 below (row nonzero allocation) to be nonmagic
: This assembly is likely to generate many communications. Try to interleave other operations by executing them between Begin() and End().
Could remove this dynamic_cast by moving the code block below into AbstractCentreBasedCellPopulation::AddCell(), allowing it to be overruled by this method when overridden in subclasses. See also comment on #1093.
do something for vertex models here
: #1082 won't work in parallel
: #1082 won't work in parallel
: #1082 assert size(x1) = size(x21) + size(x22)
: #1082 legacy, no need to use the references
: #1082 OK in parallel. Use as an example for the other two blocks
Mesh should be const (#1076)
Mesh should be const (#1663)
#1930 Until there is an interator_facade over boundary elements,
#1930 Once there is an interator_facade then we can do: elem_index = pMeshReader->GetFaceData(face_index).ContainingElement;
Mesh should be const (#1076)
Mesh should be const (#1663)
#1949
#1899 or #1949 Is this necessary?
#1949
#1949
#1949
We want to make these maps private, so we need a better way of doing the code below.
this is a kludge to remove the cell once a T2Swap occurs this is not included in the dead cells counter. This should be included in the RemoveDeadCells method so the death is counted
#2146 - bug in the making? If this attribute is supposed to be zero we will assume there isn't one!
Store face orientations? (#1076/#1377)
Mesh should be const (#1076)
Mesh should be const (#1076)
#1322 Mesh should really be const!
#1322 Mesh should be const
#1494 Do we need a barrier?
1.7.4