#include <VolumeTrackedOffLatticeSimulation.hpp>

Inheritance diagram for VolumeTrackedOffLatticeSimulation< DIM >:

Collaboration diagram for VolumeTrackedOffLatticeSimulation< DIM >:

Public Member Functions
	VolumeTrackedOffLatticeSimulation (AbstractCellPopulation< DIM > &rCellPopulation, bool deleteCellPopulationInDestructor=false, bool initialiseCells=true)
	~VolumeTrackedOffLatticeSimulation ()
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
void	SetupSolve ()
void	UpdateAtEndOfTimeStep ()
void	UpdateCellData ()
Friends
class	boost::serialization::access

Detailed Description

template<unsigned DIM>
class VolumeTrackedOffLatticeSimulation< DIM >

Subclass of OffLatticeSimulation in which the volume of the cells is used in a CellData structure for contact inhibition below a threshold volume.

Definition at line 49 of file VolumeTrackedOffLatticeSimulation.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>

VolumeTrackedOffLatticeSimulation< DIM >::VolumeTrackedOffLatticeSimulation	(	AbstractCellPopulation< DIM > &	rCellPopulation,
		bool	deleteCellPopulationInDestructor = `false`,
		bool	initialiseCells = `true`
	)

Default constructor.

Parameters:

rCellPopulation	A cell population facade class (contains a mesh and cells)
deleteCellPopulationInDestructor	Whether to delete the cell population on destruction to free up memory (defaults to false)
initialiseCells	whether to initialise cells (defaults to true, set to false when loading from an archive)

Definition at line 40 of file VolumeTrackedOffLatticeSimulation.cpp.

template<unsigned DIM>

VolumeTrackedOffLatticeSimulation< DIM >::~VolumeTrackedOffLatticeSimulation ( )

Destructor.

Definition at line 48 of file VolumeTrackedOffLatticeSimulation.cpp.

Member Function Documentation

template<unsigned DIM>

template<class Archive >

void VolumeTrackedOffLatticeSimulation< DIM >::serialize	(	Archive &	archive,
		const unsigned int	version
	)		`[inline, private]`

Archive the object and its member variables.

Parameters:

archive	the archive
version	the current version of this class

Reimplemented from OffLatticeSimulation< DIM >.

Definition at line 62 of file VolumeTrackedOffLatticeSimulation.hpp.

template<unsigned DIM>

void VolumeTrackedOffLatticeSimulation< DIM >::SetupSolve ( ) [private, virtual]

Overridden SetupSolve() method. Calls UpdateCellData().

Reimplemented from OffLatticeSimulation< DIM >.

Definition at line 53 of file VolumeTrackedOffLatticeSimulation.cpp.

template<unsigned DIM>

void VolumeTrackedOffLatticeSimulation< DIM >::UpdateAtEndOfTimeStep ( ) [private, virtual]

Overridden UpdateAtEndOfTimeStep() method. Calls UpdateCellData().

Reimplemented from AbstractCellBasedSimulation< ELEMENT_DIM, ELEMENT_DIM >.

Definition at line 63 of file VolumeTrackedOffLatticeSimulation.cpp.

template<unsigned DIM>

void VolumeTrackedOffLatticeSimulation< DIM >::UpdateCellData ( ) [private]

Compute the volume of each cell in the population and store these in the CellData.

This hack is needed because in the case of a MeshBasedCellPopulation in which multiple cell divisions have occurred over one time step, the Voronoi tessellation (while existing) is out-of-date. Thus, if we did not regenerate the Voronoi tessellation here, an assertion may trip as we try to access a Voronoi element whose index exceeds the number of elements in the out-of-date tessellation.