VanLeeuwen2009WntSwatCellCycleModelHypothesisOne Class Reference

#include <VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp>

Inheritance diagram for VanLeeuwen2009WntSwatCellCycleModelHypothesisOne:

Collaboration diagram for VanLeeuwen2009WntSwatCellCycleModelHypothesisOne:

List of all members.

Public Member Functions
	VanLeeuwen2009WntSwatCellCycleModelHypothesisOne (boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >())
void	InitialiseOdeSystem (double wntConcentration, boost::shared_ptr< AbstractCellMutationState > pMutationState)
AbstractCellCycleModel *	CreateCellCycleModel ()
virtual void	OutputCellCycleModelParameters (out_stream &rParamsFile)
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
Friends
class	boost::serialization::access

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Detailed Description

Concrete Van Leeuwen 2009 cell-cycle model, using hypothesis one (see paper).

Definition at line 44 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp.

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Constructor & Destructor Documentation

VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::VanLeeuwen2009WntSwatCellCycleModelHypothesisOne

(

boost::shared_ptr< AbstractCellCycleModelOdeSolver >

pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>()

)

Default constructor calls base class.

Parameters:

pOdeSolver

An optional pointer to a cell-cycle model ODE solver object (allows the use of different ODE solvers)

Definition at line 38 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp.

References CellCycleModelOdeHandler::mpOdeSolver, and CellCycleModelOdeHandler::SetDt().

Referenced by CreateCellCycleModel().

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Member Function Documentation

AbstractCellCycleModel * VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::CreateCellCycleModel

(

)

[virtual]

Overridden builder method to create new copies of this cell-cycle model.

Implements AbstractCellCycleModel.

Definition at line 62 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp.

References AbstractWntOdeBasedCellCycleModel::GetWntLevel(), InitialiseOdeSystem(), AbstractCellCycleModel::mBirthTime, AbstractCellCycleModel::mDimension, AbstractOdeBasedCellCycleModel::mDivideTime, AbstractOdeBasedCellCycleModel::mFinishedRunningOdes, AbstractCellCycleModel::mG2Duration, AbstractOdeBasedCellCycleModel::mG2PhaseStartTime, CellCycleModelOdeHandler::mLastTime, AbstractCellCycleModel::mMDuration, AbstractCellCycleModel::mMinimumGapDuration, AbstractCellCycleModel::mpCell, CellCycleModelOdeHandler::mpOdeSolver, CellCycleModelOdeHandler::mpOdeSystem, AbstractCellCycleModel::mSDuration, AbstractCellCycleModel::mStemCellG1Duration, AbstractCellCycleModel::mTransitCellG1Duration, AbstractParameterisedSystem< VECTOR >::rGetStateVariables(), AbstractOdeBasedCellCycleModel::SetBirthTime(), AbstractCellCycleModel::SetDimension(), AbstractOdeBasedCellCycleModel::SetDivideTime(), AbstractOdeBasedCellCycleModel::SetFinishedRunningOdes(), AbstractCellCycleModel::SetG2Duration(), AbstractOdeBasedCellCycleModel::SetG2PhaseStartTime(), CellCycleModelOdeHandler::SetLastTime(), AbstractCellCycleModel::SetMDuration(), AbstractCellCycleModel::SetMinimumGapDuration(), AbstractCellCycleModel::SetSDuration(), CellCycleModelOdeHandler::SetStateVariables(), AbstractCellCycleModel::SetStemCellG1Duration(), AbstractCellCycleModel::SetTransitCellG1Duration(), and VanLeeuwen2009WntSwatCellCycleModelHypothesisOne().

void VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::InitialiseOdeSystem	(	double	wntConcentration,
		boost::shared_ptr< AbstractCellMutationState >	pMutationState
	)		[virtual]

Overloaded method which allocates the ODE system using HYPOTHESIS ONE.

Parameters:

wntConcentration	Wnt concentration
pMutationState	Mutation state

Implements AbstractVanLeeuwen2009WntSwatCellCycleModel.

Definition at line 57 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp.

References CellCycleModelOdeHandler::mpOdeSystem.

Referenced by CreateCellCycleModel().

void VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::OutputCellCycleModelParameters

(

out_stream &

rParamsFile

)

[virtual]

Outputs cell-cycle model parameters to file.

Parameters:

rParamsFile

the file stream to which the parameters are output

Reimplemented from AbstractVanLeeuwen2009WntSwatCellCycleModel.

Definition at line 104 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp.

template<class Archive >

void VanLeeuwen2009WntSwatCellCycleModelHypothesisOne::serialize	(	Archive &	archive,
		const unsigned int	version
	)		[inline, private]

Archive the cell-cycle model, never used directly - boost uses this.

Parameters:

archive	the archive
version	the current version of this class

Reimplemented from AbstractVanLeeuwen2009WntSwatCellCycleModel.

Definition at line 50 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp.

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Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractVanLeeuwen2009WntSwatCellCycleModel.

Definition at line 48 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp.

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The documentation for this class was generated from the following files:

• crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.hpp
• crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisOne.cpp