#include <VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.hpp>
Inheritance diagram for VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo:
Collaboration diagram for VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo:
Public Member Functions | |
| VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo (boost::shared_ptr< AbstractCellCycleModelOdeSolver > pOdeSolver=boost::shared_ptr< AbstractCellCycleModelOdeSolver >()) | |
| void | InitialiseOdeSystem (double wntConcentration, boost::shared_ptr< AbstractCellMutationState > pMutationState) |
| AbstractCellCycleModel * | CreateCellCycleModel () |
| virtual void | OutputCellCycleModelParameters (out_stream &rParamsFile) |
Private Member Functions | |
| template<class Archive > | |
| void | serialize (Archive &archive, const unsigned int version) |
Friends | |
| class | boost::serialization::access |
Detailed Description
Concrete Van Leeuwen 2009 cell-cycle model, using hypothesis two (see paper).
Definition at line 44 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.hpp.
Constructor & Destructor Documentation
| VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo::VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo | ( | boost::shared_ptr< AbstractCellCycleModelOdeSolver > | pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>() | ) |
Default constructor calls base class.
- Parameters:
-
pOdeSolver An optional pointer to a cell-cycle model ODE solver object (allows the use of different ODE solvers)
Definition at line 38 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.cpp.
References CellCycleModelOdeHandler::mpOdeSolver, and CellCycleModelOdeHandler::SetDt().
Referenced by CreateCellCycleModel().
Member Function Documentation
| AbstractCellCycleModel * VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo::CreateCellCycleModel | ( | ) | [virtual] |
Overridden builder method to create new copies of this cell-cycle model.
Implements AbstractCellCycleModel.
Definition at line 62 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.cpp.
References AbstractWntOdeBasedCellCycleModel::GetWntLevel(), InitialiseOdeSystem(), AbstractCellCycleModel::mBirthTime, AbstractCellCycleModel::mDimension, AbstractOdeBasedCellCycleModel::mDivideTime, AbstractOdeBasedCellCycleModel::mFinishedRunningOdes, AbstractCellCycleModel::mG2Duration, AbstractOdeBasedCellCycleModel::mG2PhaseStartTime, CellCycleModelOdeHandler::mLastTime, AbstractCellCycleModel::mMDuration, AbstractCellCycleModel::mMinimumGapDuration, AbstractCellCycleModel::mpCell, CellCycleModelOdeHandler::mpOdeSolver, CellCycleModelOdeHandler::mpOdeSystem, AbstractCellCycleModel::mSDuration, AbstractCellCycleModel::mStemCellG1Duration, AbstractCellCycleModel::mTransitCellG1Duration, AbstractParameterisedSystem< VECTOR >::rGetStateVariables(), AbstractOdeBasedCellCycleModel::SetBirthTime(), AbstractCellCycleModel::SetDimension(), AbstractOdeBasedCellCycleModel::SetDivideTime(), AbstractOdeBasedCellCycleModel::SetFinishedRunningOdes(), AbstractCellCycleModel::SetG2Duration(), AbstractOdeBasedCellCycleModel::SetG2PhaseStartTime(), CellCycleModelOdeHandler::SetLastTime(), AbstractCellCycleModel::SetMDuration(), AbstractCellCycleModel::SetMinimumGapDuration(), AbstractCellCycleModel::SetSDuration(), CellCycleModelOdeHandler::SetStateVariables(), AbstractCellCycleModel::SetStemCellG1Duration(), AbstractCellCycleModel::SetTransitCellG1Duration(), and VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo().
| void VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo::InitialiseOdeSystem | ( | double | wntConcentration, |
| boost::shared_ptr< AbstractCellMutationState > | pMutationState | ||
| ) | [virtual] |
Overloaded method which allocates the ODE system using HYPOTHESIS TWO.
- Parameters:
-
wntConcentration Wnt concentration pMutationState Mutation state
Implements AbstractVanLeeuwen2009WntSwatCellCycleModel.
Definition at line 57 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.cpp.
References CellCycleModelOdeHandler::mpOdeSystem.
Referenced by CreateCellCycleModel().
| void VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo::OutputCellCycleModelParameters | ( | out_stream & | rParamsFile | ) | [virtual] |
Outputs cell-cycle model parameters to file.
- Parameters:
-
rParamsFile the file stream to which the parameters are output
Reimplemented from AbstractVanLeeuwen2009WntSwatCellCycleModel.
Definition at line 104 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.cpp.
| void VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo::serialize | ( | Archive & | archive, |
| const unsigned int | version | ||
| ) | [inline, private] |
Archive the cell-cycle model, never used directly - boost uses this.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractVanLeeuwen2009WntSwatCellCycleModel.
Definition at line 51 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.hpp.
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractVanLeeuwen2009WntSwatCellCycleModel.
Definition at line 49 of file VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.hpp.
The documentation for this class was generated from the following files:
- crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.hpp
- crypt/src/cell/cycle/VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo.cpp
