PottsMeshWriter< DIM > Class Template Reference

#include <PottsMeshWriter.hpp>

Inheritance diagram for PottsMeshWriter< DIM >:

Collaboration diagram for PottsMeshWriter< DIM >:

Public Member Functions
	PottsMeshWriter (const std::string &rDirectory, const std::string &rBaseName, const bool clearOutputDir=true)
	~PottsMeshWriter ()
void	WriteFilesUsingMesh (PottsMesh< SPACE_DIM > &rMesh)
std::vector< double >	GetNextNode ()
ElementData	GetNextElement ()
void	WriteFiles ()
Public Member Functions inherited from AbstractMeshWriter< SPACE_DIM, SPACE_DIM >
	AbstractMeshWriter (const std::string &rDirectory, const std::string &rBaseName, const bool clearOutputDir=true)
virtual	~AbstractMeshWriter ()
std::string	GetOutputDirectory ()
virtual unsigned	GetNumNodes ()
unsigned	GetNumElements ()
unsigned	GetNumBoundaryFaces ()
unsigned	GetNumCableElements ()
virtual ElementData	GetNextBoundaryElement ()
virtual ElementData	GetNextCableElement ()
void	WriteFilesUsingMeshReader (AbstractMeshReader< ELEMENT_DIM, SPACE_DIM > &rMeshReader)

Private Attributes
PottsMesh< SPACE_DIM > *	mpMesh
MeshPottsWriterIterators < SPACE_DIM > *	mpIters
NodeMap *	mpNodeMap
unsigned	mNodeMapCurrentIndex

Additional Inherited Members
Protected Attributes inherited from AbstractMeshWriter< SPACE_DIM, SPACE_DIM >
OutputFileHandler *	mpOutputFileHandler
std::string	mBaseName
AbstractMeshReader < ELEMENT_DIM, SPACE_DIM > *	mpMeshReader
unsigned	mNumNodes
unsigned	mNumElements
unsigned	mNumBoundaryElements
unsigned	mNumCableElements

Detailed Description

template<unsigned DIM>
class PottsMeshWriter< DIM >

A mesh writer class for Potts meshes.

Definition at line 41 of file PottsMesh.hpp.

Constructor & Destructor Documentation

template<unsigned SPACE_DIM>

PottsMeshWriter< SPACE_DIM >::PottsMeshWriter	(	const std::string &	rDirectory,
		const std::string &	rBaseName,
		const bool	clearOutputDir = true
	)

Constructor.

Parameters

rDirectory	reference to the output directory, relative to where Chaste output is stored
rBaseName	reference to the base name for results files
clearOutputDir	whether to clear the output directory prior to writing files (defaults to true)

Definition at line 56 of file PottsMeshWriter.cpp.

References PottsMeshWriter< DIM >::mpIters.

template<unsigned SPACE_DIM>

PottsMeshWriter< SPACE_DIM >::~PottsMeshWriter

(

)

Destructor.

Definition at line 70 of file PottsMeshWriter.cpp.

Member Function Documentation

template<unsigned SPACE_DIM>

ElementData PottsMeshWriter< SPACE_DIM >::GetNextElement ( )

virtual

Returns

the data (indices/attributes) of the next element to be written to file

Reimplemented from AbstractMeshWriter< SPACE_DIM, SPACE_DIM >.

Definition at line 114 of file PottsMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextElement(), and ElementData::NodeIndices.

template<unsigned SPACE_DIM>

std::vector< double > PottsMeshWriter< SPACE_DIM >::GetNextNode ( )

virtual

Returns

the coordinates of the next node to be written to file

Reimplemented from AbstractMeshWriter< SPACE_DIM, SPACE_DIM >.

Definition at line 87 of file PottsMeshWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::GetNextNode().

template<unsigned SPACE_DIM>

void PottsMeshWriter< SPACE_DIM >::WriteFiles ( )

virtual

Write mesh data to files. This method must be overridden in concrete classes.

Implements AbstractMeshWriter< SPACE_DIM, SPACE_DIM >.

Definition at line 171 of file PottsMeshWriter.cpp.

References ElementData::AttributeValue, ChasteBuildInfo::GetProvenanceString(), and ElementData::NodeIndices.

template<unsigned SPACE_DIM>

void PottsMeshWriter< SPACE_DIM >::WriteFilesUsingMesh

(

PottsMesh< SPACE_DIM > &

rMesh

)

Todo:

Mesh should be const (#1076)

Write files using a mesh.

Parameters

rMesh

reference to the Potts mesh

Todo:

Mesh should be const (#1663)

Definition at line 142 of file PottsMeshWriter.cpp.

References PottsMesh< DIM >::GetNumNodes(), and NodeMap::SetNewIndex().

Referenced by PottsMesh< SPACE_DIM >::save().

Member Data Documentation

template<unsigned DIM>

unsigned PottsMeshWriter< DIM >::mNodeMapCurrentIndex

private

What was the last index written to mpNodeMap ?

Definition at line 71 of file PottsMeshWriter.hpp.

template<unsigned DIM>

MeshPottsWriterIterators<SPACE_DIM>* PottsMeshWriter< DIM >::mpIters

private

Iterators over the mesh

Definition at line 65 of file PottsMeshWriter.hpp.

Referenced by PottsMeshWriter< DIM >::PottsMeshWriter().

template<unsigned DIM>

PottsMesh<SPACE_DIM>* PottsMeshWriter< DIM >::mpMesh

private

If writing from a mesh object, the mesh to write to disk. Otherwise NULL.

Definition at line 62 of file PottsMeshWriter.hpp.

template<unsigned DIM>

NodeMap* PottsMeshWriter< DIM >::mpNodeMap

private

Track deleted nodes so they don't get written

Definition at line 68 of file PottsMeshWriter.hpp.

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The documentation for this class was generated from the following files:

• cell_based/src/mesh/PottsMesh.hpp
• cell_based/src/mesh/PottsMeshWriter.hpp
• cell_based/src/mesh/PottsMeshWriter.cpp