Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
CellCycleModelOdeSolver.hpp
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35
36#ifndef CELLCYCLEMODELODESOLVER_HPP_
37#define CELLCYCLEMODELODESOLVER_HPP_
38
39#include <boost/utility.hpp>
40
42
43#include "AbstractCellCycleModelOdeSolver.hpp"
44#include "BackwardEulerIvpOdeSolver.hpp"
45#include "CvodeAdaptor.hpp"
46
57template <class CELL_CYCLE_MODEL, class ODE_SOLVER>
58class CellCycleModelOdeSolver : public AbstractCellCycleModelOdeSolver, private boost::noncopyable
59{
60private:
62 static boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER> > mpInstance;
63
66
75 template<class Archive>
76 void serialize(Archive & archive, const unsigned int version)
77 {
78 archive & boost::serialization::base_object<AbstractCellCycleModelOdeSolver>(*this);
79 archive & mpInstance;
80 }
81
82public:
84 static boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER> > Instance();
85
87 bool IsSetUp();
88
90 void Initialise();
91
99 virtual bool IsAdaptive();
100
102 void Reset();
103};
104
106template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
107boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER> > CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::mpInstance;
108
109
110template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
122
123template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
124boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER> > CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::Instance()
125{
126 if (!mpInstance)
127 {
129 }
130 return mpInstance;
131}
132
133template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
135{
136 return static_cast<bool>(mpOdeSolver.get());
137}
138
139template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
141{
142 mpOdeSolver.reset(new ODE_SOLVER);
143 // If this is a CVODE solver we need to tell it to reset. Otherwise
144 // the fact this is a singleton will lead to all sorts of problems
145 // as CVODE will have the internal state for the wrong ODE system!
146#ifdef CHASTE_CVODE
147 if (boost::dynamic_pointer_cast<CvodeAdaptor>(mpOdeSolver))
148 {
149 (boost::static_pointer_cast<CvodeAdaptor>(mpOdeSolver))->SetForceReset(true);
150 }
151#endif //CHASTE_CVODE
152}
153
154template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
159
160template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
165
170template<class CELL_CYCLE_MODEL>
171class CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> : public AbstractCellCycleModelOdeSolver, private boost::noncopyable
172{
173private:
175 static boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> > mpInstance;
176
179
181 friend class boost::serialization::access;
188 template<class Archive>
189 void serialize(Archive & archive, const unsigned int version)
190 {
191 archive & boost::serialization::base_object<AbstractCellCycleModelOdeSolver>(*this);
192 archive & mpInstance;
193 }
194
195public:
197 static boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> > Instance();
198
200 bool IsSetUp();
201
203 void Initialise();
204
206 void Reset();
207};
208
209template<class CELL_CYCLE_MODEL>
210boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> > CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>::mpInstance;
211
212template<class CELL_CYCLE_MODEL>
217
218template<class CELL_CYCLE_MODEL>
219boost::shared_ptr<CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver> > CellCycleModelOdeSolver<CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver>::Instance()
220{
221 if (!mpInstance)
222 {
224 }
225 return mpInstance;
226}
227
228template<class CELL_CYCLE_MODEL>
230{
231 return mpOdeSolver && (mSizeOfOdeSystem != UNSIGNED_UNSET);
232}
233
234template<class CELL_CYCLE_MODEL>
236{
237 if (mSizeOfOdeSystem == UNSIGNED_UNSET)
238 {
239 EXCEPTION("SetSizeOfOdeSystem() must be called before calling Initialise()");
240 }
241 mpOdeSolver.reset(new BackwardEulerIvpOdeSolver(mSizeOfOdeSystem));
242}
243
244template<class CELL_CYCLE_MODEL>
246{
247 mSizeOfOdeSystem = UNSIGNED_UNSET;
248 mpOdeSolver.reset();
249}
250
251#endif /*CELLCYCLEMODELODESOLVER_HPP_*/
#define EXCEPTION(message)
const unsigned UNSIGNED_UNSET
Definition Exception.hpp:53
static boost::shared_ptr< CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver > > mpInstance
static boost::shared_ptr< CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > > Instance()
static boost::shared_ptr< CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > > mpInstance
friend class boost::serialization::access
void serialize(Archive &archive, const unsigned int version)