Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
FineCoarseMeshPair.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
5
6University of Oxford means the Chancellor, Masters and Scholars of the
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8Square, Oxford OX1 2JD, UK.
9
10This file is part of Chaste.
11
12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
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19 * Neither the name of the University of Oxford nor the names of its
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21 software without specific prior written permission.
22
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24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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33
34*/
35
36#include "FineCoarseMeshPair.hpp"
37
38template<unsigned DIM>
40 : mrFineMesh(rFineMesh),
41 mrCoarseMesh(rCoarseMesh),
42 mpFineMeshBoxCollection(nullptr),
43 mpCoarseMeshBoxCollection(nullptr)
44{
46}
47
48template<unsigned DIM>
53
54template<unsigned DIM>
56{
57 return mrCoarseMesh;
58}
59
60template<unsigned DIM>
62{
63 DeleteFineBoxCollection();
64 DeleteCoarseBoxCollection();
65}
66
67template<unsigned DIM>
69{
70 if (mpFineMeshBoxCollection != nullptr)
71 {
72 delete mpFineMeshBoxCollection;
73 mpFineMeshBoxCollection = nullptr;
74 }
75}
76
77template<unsigned DIM>
79{
80 if (mpCoarseMeshBoxCollection != nullptr)
81 {
82 delete mpCoarseMeshBoxCollection;
83 mpCoarseMeshBoxCollection = nullptr;
84 }
85}
86
88// Setting up boxes methods
90
91template<unsigned DIM>
93{
94 SetUpBoxes(mrFineMesh, boxWidth, mpFineMeshBoxCollection);
95}
96
97template<unsigned DIM>
99{
100 SetUpBoxes(mrCoarseMesh, boxWidth, mpCoarseMeshBoxCollection);
101}
102
103template<unsigned DIM>
105 double boxWidth,
106 DistributedBoxCollection<DIM>*& rpBoxCollection)
107{
108 if (rpBoxCollection)
109 {
110 delete rpBoxCollection;
111 rpBoxCollection = nullptr;
112 }
113
114 // Compute min and max values for the fine mesh nodes
115 ChasteCuboid<DIM> bounding_box = rMesh.CalculateBoundingBox();
116
117 // Set up the boxes using a domain that is slightly larger than the fine mesh
118 c_vector<double,2*DIM> extended_min_and_max;
119 for (unsigned i=0; i<DIM; i++)
120 {
121 double width = bounding_box.GetWidth(i);
122
123 // Subtract from the minima
124 extended_min_and_max(2*i) = bounding_box.rGetLowerCorner()[i] - 0.05*width;
125
126 // Add to the maxima
127 extended_min_and_max(2*i+1) = bounding_box.rGetUpperCorner()[i] + 0.05*width;
128 }
129
130 if (boxWidth < 0)
131 {
132 /*
133 * Use default value = max(max_edge_length, w20), where w20 is the width
134 * corresponding to 20 boxes in the x-direction.
135 *
136 * BoxCollection creates an extra box so divide by 19 not 20. Add a little
137 * bit on to ensure minor numerical fluctuations don't change the answer.
138 */
139 boxWidth = (extended_min_and_max(1) - extended_min_and_max(0))/19.000000001;
140
141 // Determine the maximum edge length
142 c_vector<double, 2> min_max_edge_length = rMesh.CalculateMinMaxEdgeLengths();
143
144 if (boxWidth < min_max_edge_length[1])
145 {
146 boxWidth = 1.1*min_max_edge_length[1];
147 }
148 }
149
150 rpBoxCollection = new DistributedBoxCollection<DIM>(boxWidth, extended_min_and_max);
151 rpBoxCollection->SetupAllLocalBoxes();
152
153 // For each element, if ANY of its nodes are physically in a box, put that element in that box
154 for (unsigned i=0; i<rMesh.GetNumElements(); i++)
155 {
156 Element<DIM,DIM>* p_element = rMesh.GetElement(i);
157
158 std::set<unsigned> box_indices_each_node_this_elem;
159 for (unsigned j=0; j<DIM+1; j++) // num vertices per element
160 {
161 Node<DIM>* p_node = p_element->GetNode(j);
162 // Only take note of box inclusions which are in our domain
163 if (rpBoxCollection->IsOwned(p_node))
164 {
165 unsigned box_index = rpBoxCollection->CalculateContainingBox(p_node);
166 box_indices_each_node_this_elem.insert(box_index);
167 }
168 }
169 for (std::set<unsigned>::iterator iter = box_indices_each_node_this_elem.begin();
170 iter != box_indices_each_node_this_elem.end();
171 ++iter)
172 {
173 assert(rpBoxCollection->IsBoxOwned( *iter ));
174 rpBoxCollection->rGetBox( *iter ).AddElement(p_element);
175 }
176 }
177}
178
180// ComputeFineElementsAndWeightsForCoarseQuadPoints()
181// and
182// ComputeFineElementsAndWeightsForCoarseNodes()
183// and
184// common method
186
187template<unsigned DIM>
189 bool safeMode)
190{
191 if (mpFineMeshBoxCollection == nullptr)
192 {
193 EXCEPTION("Call SetUpBoxesOnFineMesh() before ComputeFineElementsAndWeightsForCoarseQuadPoints()");
194 }
195
196 // Get the quad point (physical) positions
197 QuadraturePointsGroup<DIM> quad_point_posns(mrCoarseMesh, rQuadRule);
198
199 // Resize the elements and weights vector.
200 mFineMeshElementsAndWeights.resize(quad_point_posns.Size());
201 // Make sure that, in parallel, silent processes have their structs initialised to zero values
202 for (unsigned i=0; i<mFineMeshElementsAndWeights.size(); i++)
203 {
204 mFineMeshElementsAndWeights[i].ElementNum = 0u;
205 mFineMeshElementsAndWeights[i].Weights = zero_vector<double>(DIM+1);
206 }
207
208
209 // LCOV_EXCL_START
210 if (CommandLineArguments::Instance()->OptionExists("-mesh_pair_verbose"))
211 {
212 std::cout << "\nComputing fine elements and weights for coarse quad points\n";
213 }
214 // LCOV_EXCL_STOP
215
216
217 ResetStatisticsVariables();
218 for (unsigned i=0; i<quad_point_posns.Size(); i++)
219 {
220 // LCOV_EXCL_START
221 if (CommandLineArguments::Instance()->OptionExists("-mesh_pair_verbose"))
222 {
223 std::cout << "\t" << i << " of " << quad_point_posns.Size() << std::flush;
224 }
225 // LCOV_EXCL_STOP
226
227 // Get the box this point is in
228 unsigned box_for_this_point = mpFineMeshBoxCollection->CalculateContainingBox( quad_point_posns.rGet(i) );
229 if (mpFineMeshBoxCollection->IsBoxOwned(box_for_this_point))
230 {
231 // A chaste point version of the c-vector is needed for the GetContainingElement call.
232 ChastePoint<DIM> point(quad_point_posns.rGet(i));
233
234 ComputeFineElementAndWeightForGivenPoint(point, safeMode, box_for_this_point, i);
235 }
236 else
237 {
238 assert(mFineMeshElementsAndWeights[i].ElementNum == 0u);
239 assert(norm_2(mFineMeshElementsAndWeights[i].Weights) == 0.0 );
240 }
241 }
242 ShareFineElementData();
243 if (mStatisticsCounters[1] > 0)
244 {
245 WARNING(mStatisticsCounters[1] << " of " << quad_point_posns.Size() << " coarse-mesh quadrature points were outside the fine mesh");
246 }
247}
248
249template<unsigned DIM>
251{
252 if (mpFineMeshBoxCollection==nullptr)
253 {
254 EXCEPTION("Call SetUpBoxesOnFineMesh() before ComputeFineElementsAndWeightsForCoarseNodes()");
255 }
256
257 // Resize the elements and weights vector.
258 mFineMeshElementsAndWeights.resize(mrCoarseMesh.GetNumNodes());
259 // Make sure that, in parallel, silent processes have their structs initialised to zero values
260 for (unsigned i=0; i<mFineMeshElementsAndWeights.size(); i++)
261 {
262 mFineMeshElementsAndWeights[i].ElementNum = 0u;
263 mFineMeshElementsAndWeights[i].Weights = zero_vector<double>(DIM+1);
264 }
265
266 // LCOV_EXCL_START
267 if (CommandLineArguments::Instance()->OptionExists("-mesh_pair_verbose"))
268 {
269 std::cout << "\nComputing fine elements and weights for coarse nodes\n";
270 }
271 // LCOV_EXCL_STOP
272
273
274 ResetStatisticsVariables();
275 for (unsigned i=0; i<mrCoarseMesh.GetNumNodes(); i++)
276 {
277 // LCOV_EXCL_START
278 if (CommandLineArguments::Instance()->OptionExists("-mesh_pair_verbose"))
279 {
280 std::cout << "\t" << i << " of " << mrCoarseMesh.GetNumNodes() << std::flush;
281 }
282 // LCOV_EXCL_STOP
283
284 Node<DIM>* p_node = mrCoarseMesh.GetNode(i);
285
286 // Get the box this point is in
287 unsigned box_for_this_point = mpFineMeshBoxCollection->CalculateContainingBox( p_node->rGetModifiableLocation() );
288 if (mpFineMeshBoxCollection->IsBoxOwned(box_for_this_point))
289 {
290 // A chaste point version of the c-vector is needed for the GetContainingElement call
291 ChastePoint<DIM> point(p_node->rGetLocation());
292
293 ComputeFineElementAndWeightForGivenPoint(point, safeMode, box_for_this_point, i);
294 }
295 }
296 ShareFineElementData();
297}
298
305template<unsigned DIM>
307 bool safeMode,
308 unsigned boxForThisPoint,
309 unsigned index)
310{
311 std::set<unsigned> test_element_indices;
312
313 /*
314 * The elements to try (initially) are those contained in the box the point is in.
315 *
316 * Note: it is possible the point to be in an element not 'in' this box, as it is
317 * possible for all element nodes to be in different boxes.
318 */
319 CollectElementsInContainingBox(mpFineMeshBoxCollection, boxForThisPoint, test_element_indices);
320
321 unsigned elem_index;
322 c_vector<double,DIM+1> weight;
323
324 try
325 {
326 //std::cout << "\n" << "# test elements initially " << test_element_indices.size() << "\n";
327 // Try these elements only, initially
328 elem_index = mrFineMesh.GetContainingElementIndex(rPoint,
329 false,
330 test_element_indices,
331 true /* quit if not in test_elements */);
332 weight = mrFineMesh.GetElement(elem_index)->CalculateInterpolationWeights(rPoint);
333
334 mStatisticsCounters[0]++;
335 }
336 catch(Exception&) //not_in_box
337 {
338 // Now try all elements, trying the elements contained in the boxes local to this element first
339 test_element_indices.clear();
340
341 CollectElementsInLocalBoxes(mpFineMeshBoxCollection, boxForThisPoint, test_element_indices);
342
343 try
344 {
345 elem_index = mrFineMesh.GetContainingElementIndex(rPoint, false, test_element_indices, true);
346 weight = mrFineMesh.GetElement(elem_index)->CalculateInterpolationWeights(rPoint);
347 mStatisticsCounters[0]++;
348 }
349 catch(Exception&) //not_in_local_boxes
350 {
351 if (safeMode)
352 {
353 // Try the remaining elements
354 try
355 {
356 elem_index = mrFineMesh.GetContainingElementIndex(rPoint, false);
357 weight = mrFineMesh.GetElement(elem_index)->CalculateInterpolationWeights(rPoint);
358 mStatisticsCounters[0]++;
359
360 }
361 catch (Exception&) // not_in_mesh
362 {
363 // The point is not in ANY element, so store the nearest element and corresponding weights
364 elem_index = mrFineMesh.GetNearestElementIndexFromTestElements(rPoint,test_element_indices);
365 weight = mrFineMesh.GetElement(elem_index)->CalculateInterpolationWeights(rPoint);
366
367 mNotInMesh.push_back(index);
368 mNotInMeshNearestElementWeights.push_back(weight);
369 mStatisticsCounters[1]++;
370 }
371 }
372 else
373 {
374 assert(test_element_indices.size() > 0); // boxes probably too small if this fails
375
376 /*
377 * Immediately assume it isn't in the rest of the mesh - this should be the
378 * case assuming the box width was chosen suitably. Store the nearest element
379 * and corresponding weights.
380 */
381 elem_index = mrFineMesh.GetNearestElementIndexFromTestElements(rPoint,test_element_indices);
382 weight = mrFineMesh.GetElement(elem_index)->CalculateInterpolationWeights(rPoint);
383
384 mNotInMesh.push_back(index);
385 mNotInMeshNearestElementWeights.push_back(weight);
386 mStatisticsCounters[1]++;
387 }
388 }
389 }
390
391 mFineMeshElementsAndWeights[index].ElementNum = elem_index;
392 mFineMeshElementsAndWeights[index].Weights = weight;
393}
394
396// ComputeCoarseElementsForFineNodes
397// and
398// ComputeCoarseElementsForFineElementCentroids
399// and
400// common method
402
403template<unsigned DIM>
405{
406 if (mpCoarseMeshBoxCollection==nullptr)
407 {
408 EXCEPTION("Call SetUpBoxesOnCoarseMesh() before ComputeCoarseElementsForFineNodes()");
409 }
410
411 // LCOV_EXCL_START
412 if (CommandLineArguments::Instance()->OptionExists("-mesh_pair_verbose"))
413 {
414 std::cout << "\nComputing coarse elements for fine nodes\n";
415 }
416 // LCOV_EXCL_STOP
417 mCoarseElementsForFineNodes.clear();
418 mCoarseElementsForFineNodes.resize(mrFineMesh.GetNumNodes(), 0.0);
419
420 ResetStatisticsVariables();
421 for (unsigned i=0; i<mCoarseElementsForFineNodes.size(); i++)
422 {
423 // LCOV_EXCL_START
424 if (CommandLineArguments::Instance()->OptionExists("-mesh_pair_verbose"))
425 {
426 std::cout << "\t" << i << " of " << mCoarseElementsForFineNodes.size() << std::flush;
427 }
428 // LCOV_EXCL_STOP
429
430 ChastePoint<DIM> point = mrFineMesh.GetNode(i)->GetPoint();
431
432 // Get the box this point is in
433 unsigned box_for_this_point = mpCoarseMeshBoxCollection->CalculateContainingBox(mrFineMesh.GetNode(i)->rGetModifiableLocation());
434 if (mpCoarseMeshBoxCollection->IsBoxOwned(box_for_this_point))
435 {
436 mCoarseElementsForFineNodes[i] = ComputeCoarseElementForGivenPoint(point, safeMode, box_for_this_point);
437 }
438 }
439 ShareCoarseElementData();
440}
441
442template<unsigned DIM>
444{
445 if (mpCoarseMeshBoxCollection==nullptr)
446 {
447 EXCEPTION("Call SetUpBoxesOnCoarseMesh() before ComputeCoarseElementsForFineElementCentroids()");
448 }
449
450 // LCOV_EXCL_START
451 if (CommandLineArguments::Instance()->OptionExists("-mesh_pair_verbose"))
452 {
453 std::cout << "\nComputing coarse elements for fine element centroids\n";
454 }
455 // LCOV_EXCL_STOP
456
457 mCoarseElementsForFineElementCentroids.clear();
458 mCoarseElementsForFineElementCentroids.resize(mrFineMesh.GetNumElements(), 0.0);
459
460 ResetStatisticsVariables();
461 for (unsigned i=0; i<mrFineMesh.GetNumElements(); i++)
462 {
463 // LCOV_EXCL_START
464 if (CommandLineArguments::Instance()->OptionExists("-mesh_pair_verbose"))
465 {
466 std::cout << "\t" << i << " of " << mrFineMesh.GetNumElements() << std::flush;
467 }
468 // LCOV_EXCL_STOP
469
470 c_vector<double,DIM> point_cvec = mrFineMesh.GetElement(i)->CalculateCentroid();
471 ChastePoint<DIM> point(point_cvec);
472
473 // Get the box this point is in
474 unsigned box_for_this_point = mpCoarseMeshBoxCollection->CalculateContainingBox( point_cvec );
475
476 if (mpCoarseMeshBoxCollection->IsBoxOwned(box_for_this_point))
477 {
478 mCoarseElementsForFineElementCentroids[i] = ComputeCoarseElementForGivenPoint(point, safeMode, box_for_this_point);
479 }
480 }
481 ShareCoarseElementData();
482}
483
484template<unsigned DIM>
486 bool safeMode,
487 unsigned boxForThisPoint)
488{
495 std::set<unsigned> test_element_indices;
496 CollectElementsInContainingBox(mpCoarseMeshBoxCollection, boxForThisPoint, test_element_indices);
497
498 unsigned elem_index;
499
500 try
501 {
502 elem_index = mrCoarseMesh.GetContainingElementIndex(rPoint,
503 false,
504 test_element_indices,
505 true /* quit if not in test_elements */);
506
507 mStatisticsCounters[0]++;
508 }
509 catch(Exception&) // not_in_box
510 {
511 // Now try all elements, trying the elements contained in the boxes local to this element first
512 test_element_indices.clear();
513 CollectElementsInLocalBoxes(mpCoarseMeshBoxCollection, boxForThisPoint, test_element_indices);
514
515 try
516 {
517 elem_index = mrCoarseMesh.GetContainingElementIndex(rPoint, false, test_element_indices, true);
518 mStatisticsCounters[0]++;
519 }
520 catch(Exception&) // not_in_local_boxes
521 {
522 if (safeMode)
523 {
524 // Try the remaining elements
525 try
526 {
527 elem_index = mrCoarseMesh.GetContainingElementIndex(rPoint, false);
528
529 mStatisticsCounters[0]++;
530 }
531 catch (Exception&) // not_in_mesh
532 {
533 // The point is not in ANY element, so store the nearest element and corresponding weights
534 elem_index = mrCoarseMesh.GetNearestElementIndexFromTestElements(rPoint,test_element_indices);
535 mStatisticsCounters[1]++;
536 }
537 }
538 else
539 {
540 assert(test_element_indices.size() > 0); // boxes probably too small if this fails
541
542 /*
543 * Immediately assume it isn't in the rest of the mesh - this should be the
544 * case assuming the box width was chosen suitably. Store the nearest element
545 * and corresponding weights.
546 */
547 elem_index = mrCoarseMesh.GetNearestElementIndexFromTestElements(rPoint,test_element_indices);
548 mStatisticsCounters[1]++;
549 }
550 }
551 }
552
553 return elem_index;
554}
555
557// Helper methods for code
559
560template<unsigned DIM>
562 unsigned boxIndex,
563 std::set<unsigned>& rElementIndices)
564{
565 for (typename std::set<Element<DIM,DIM>*>::iterator elem_iter = rpBoxCollection->rGetBox(boxIndex).rGetElementsContained().begin();
566 elem_iter != rpBoxCollection->rGetBox(boxIndex).rGetElementsContained().end();
567 ++elem_iter)
568 {
569 rElementIndices.insert((*elem_iter)->GetIndex());
570 }
571}
572
573template<unsigned DIM>
575 unsigned boxIndex,
576 std::set<unsigned>& rElementIndices)
577{
578 std::set<unsigned> local_boxes = rpBoxCollection->rGetLocalBoxes(boxIndex);
579 for (std::set<unsigned>::iterator local_box_iter = local_boxes.begin();
580 local_box_iter != local_boxes.end();
581 ++local_box_iter)
582 {
583 for (typename std::set<Element<DIM,DIM>*>::iterator elem_iter = rpBoxCollection->rGetBox(*local_box_iter).rGetElementsContained().begin();
584 elem_iter != rpBoxCollection->rGetBox(*local_box_iter).rGetElementsContained().end();
585 ++elem_iter)
586 {
587 rElementIndices.insert((*elem_iter)->GetIndex());
588 }
589 }
590}
591
593// Statistics related methods
595
596template<unsigned DIM>
598{
599 mNotInMesh.clear();
600 mNotInMeshNearestElementWeights.clear();
601 mStatisticsCounters.resize(2, 0u);
602}
603
604template<unsigned DIM>
606{
608 {
609 return;
610 }
611
612 // This sums the results so it isn't idempotent: you get a different result if you call this method twice
613 // Should not matter: the methods which call this helper method have reset everything which is about to be shared
614 std::vector<unsigned> local_counters = mStatisticsCounters;
615 MPI_Allreduce(&local_counters[0], &mStatisticsCounters[0], 2u, MPI_UNSIGNED, MPI_SUM, PETSC_COMM_WORLD);
616
617
618 // Get all the element number and weights into a contiguous format
619 unsigned elements_size = mFineMeshElementsAndWeights.size();
620 std::vector<unsigned> all_element_indices(elements_size);
621 unsigned weights_size = elements_size*(DIM+1);
622 std::vector<double> all_weights(weights_size);
623 for (unsigned index=0; index<mFineMeshElementsAndWeights.size(); index++)
624 {
625 all_element_indices[index] = mFineMeshElementsAndWeights[index].ElementNum;
626 for (unsigned j=0; j<DIM+1; j++)
627 {
628 all_weights[index*(DIM+1)+j] = mFineMeshElementsAndWeights[index].Weights[j];
629 }
630 }
631
632 // Copy and share
633 std::vector<unsigned> local_all_element_indices = all_element_indices;
634 std::vector<double> local_all_weights = all_weights;
635 MPI_Allreduce(&local_all_element_indices[0], &all_element_indices[0], elements_size, MPI_UNSIGNED, MPI_SUM, PETSC_COMM_WORLD);
636 MPI_Allreduce( &local_all_weights[0], &all_weights[0], weights_size, MPI_DOUBLE, MPI_SUM, PETSC_COMM_WORLD);
637
638 // Put back into the regular data structure
639 for (unsigned index=0; index<mFineMeshElementsAndWeights.size(); index++)
640 {
641 mFineMeshElementsAndWeights[index].ElementNum = all_element_indices[index];
642 for (unsigned j=0; j<DIM+1; j++)
643 {
644 mFineMeshElementsAndWeights[index].Weights[j] = all_weights[index*(DIM+1)+j] ;
645 }
646 }
647}
648
649template<unsigned DIM>
651{
653 {
654 return;
655 }
656
657 // This sums the results so it isn't idempotent: you get a different result if you call this method twice
658 // Should not matter: the methods which call this helper method have reset #mStatisticsCounters
659 std::vector<unsigned> local_counters = mStatisticsCounters;
660 MPI_Allreduce(&local_counters[0], &mStatisticsCounters[0], 2u, MPI_UNSIGNED, MPI_SUM, PETSC_COMM_WORLD);
661
662 // The rest uses "max" so it is idempotent. You can safely re-share results between processes without them changing.
663 if (mCoarseElementsForFineNodes.empty() == false)
664 {
665 std::vector<unsigned> temp_coarse_elements = mCoarseElementsForFineNodes;
666 MPI_Allreduce( &temp_coarse_elements[0], &mCoarseElementsForFineNodes[0], mCoarseElementsForFineNodes.size(), MPI_UNSIGNED, MPI_MAX, PETSC_COMM_WORLD);
667 }
668 if (mCoarseElementsForFineElementCentroids.empty() == false)
669 {
670 std::vector<unsigned> temp_coarse_elements = mCoarseElementsForFineElementCentroids;
671 MPI_Allreduce( &temp_coarse_elements[0], &mCoarseElementsForFineElementCentroids[0], mCoarseElementsForFineElementCentroids.size(), MPI_UNSIGNED, MPI_MAX, PETSC_COMM_WORLD);
672 }
673}
674
675template<unsigned DIM>
677{
678 std::cout << "\nFineCoarseMeshPair statistics for the last-called method:\n";
679
680// std::cout << "\tNum points for which containing element was found, using box containing that point = " << mStatisticsCounters[0] << "\n";
681// std::cout << "\tNum points for which containing element was in local box = " << mStatisticsCounters[1] << "\n";
682// std::cout << "\tNum points for which containing element was in an element in a non-local box = " << mStatisticsCounters[2] << "\n";
683// std::cout << "\tNum points for which no containing element was found = " << mStatisticsCounters[3] << "\n";
684
685 std::cout << "\tNum points for which containing element was found: " << mStatisticsCounters[0] << "\n";
686 std::cout << "\tNum points for which no containing element was found = " << mStatisticsCounters[1] << "\n";
687
688 if (mNotInMesh.size() > 0)
689 {
690 std::cout << "\tIndices and weights for points (nodes/quad points) for which no containing element was found:\n";
691 for (unsigned i=0; i<mNotInMesh.size(); i++)
692 {
693 std::cout << "\t\t" << mNotInMesh[i] << ", " << mNotInMeshNearestElementWeights[i] << "\n";
694 }
695 }
696}
697
699
700template class FineCoarseMeshPair<1>;
701template class FineCoarseMeshPair<2>;
702template class FineCoarseMeshPair<3>;
#define EXCEPTION(message)
Node< SPACE_DIM > * GetNode(unsigned localIndex) const
ChasteCuboid< SPACE_DIM > CalculateBoundingBox(const std::vector< Node< SPACE_DIM > * > &rNodes) const
Element< ELEMENT_DIM, SPACE_DIM > * GetElement(unsigned index) const
virtual c_vector< double, 2 > CalculateMinMaxEdgeLengths()
virtual unsigned GetNumElements() const
const ChastePoint< SPACE_DIM > & rGetUpperCorner() const
const ChastePoint< SPACE_DIM > & rGetLowerCorner() const
double GetWidth(unsigned rDimension) const
static CommandLineArguments * Instance()
std::set< unsigned > & rGetLocalBoxes(unsigned boxIndex)
unsigned CalculateContainingBox(Node< DIM > *pNode)
bool IsBoxOwned(unsigned globalIndex)
Box< DIM > & rGetBox(unsigned boxIndex)
void SetUpBoxesOnFineMesh(double boxWidth=-1)
void CollectElementsInContainingBox(DistributedBoxCollection< DIM > *&rpBoxCollection, unsigned boxIndex, std::set< unsigned > &rElementIndices)
void ComputeFineElementsAndWeightsForCoarseQuadPoints(GaussianQuadratureRule< DIM > &rQuadRule, bool safeMode)
void SetUpBoxes(AbstractTetrahedralMesh< DIM, DIM > &rMesh, double boxWidth, DistributedBoxCollection< DIM > *&rpBoxCollection)
const AbstractTetrahedralMesh< DIM, DIM > & GetCoarseMesh() const
FineCoarseMeshPair(AbstractTetrahedralMesh< DIM, DIM > &rFineMesh, AbstractTetrahedralMesh< DIM, DIM > &rCoarseMesh)
void SetUpBoxesOnCoarseMesh(double boxWidth=-1)
const AbstractTetrahedralMesh< DIM, DIM > & GetFineMesh() const
void ComputeFineElementsAndWeightsForCoarseNodes(bool safeMode)
unsigned ComputeCoarseElementForGivenPoint(ChastePoint< DIM > &rPoint, bool safeMode, unsigned boxForThisPoint)
void ComputeCoarseElementsForFineNodes(bool safeMode)
void ComputeCoarseElementsForFineElementCentroids(bool safeMode)
void CollectElementsInLocalBoxes(DistributedBoxCollection< DIM > *&rpBoxCollection, unsigned boxIndex, std::set< unsigned > &rElementIndices)
void ComputeFineElementAndWeightForGivenPoint(ChastePoint< DIM > &rPoint, bool safeMode, unsigned boxForThisPoint, unsigned index)
Definition Node.hpp:59
c_vector< double, SPACE_DIM > & rGetModifiableLocation()
Definition Node.cpp:151
const c_vector< double, SPACE_DIM > & rGetLocation() const
Definition Node.cpp:139
static bool IsSequential()
c_vector< double, DIM > & rGet(unsigned elementIndex, unsigned quadIndex)