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• AbstractAssembler() : AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractBackwardEulerCardiacCell() : AbstractBackwardEulerCardiacCell< SIZE >
• AbstractCardiacCellFactory() : AbstractCardiacCellFactory< SPACE_DIM >
• AbstractCardiacPde() : AbstractCardiacPde< SPACE_DIM >
• AbstractCardiacProblem() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM >
• AbstractCellCentreBasedTissue() : AbstractCellCentreBasedTissue< DIM >
• AbstractCellCycleModel() : AbstractCellCycleModel
• AbstractCellKiller() : AbstractCellKiller< SPACE_DIM >
• AbstractCellsGenerator() : AbstractCellsGenerator< DIM >
• AbstractCryptStatistics() : AbstractCryptStatistics
• AbstractElement() : AbstractElement< ELEMENT_DIM, SPACE_DIM >
• AbstractForce() : AbstractForce< DIM >
• AbstractNonlinearAssembler() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• AbstractOdeBasedCellCycleModel() : AbstractOdeBasedCellCycleModel
• AbstractOdeSystem() : AbstractOdeSystem
• AbstractSimpleCellCycleModel() : AbstractSimpleCellCycleModel
• AbstractSimpleGenerationBasedCellCycleModel() : AbstractSimpleGenerationBasedCellCycleModel
• AbstractStaticAssembler() : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• AbstractTetrahedralElement() : AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
• AbstractTissue() : AbstractTissue< DIM >
• AbstractTwoBodyInteractionForce() : AbstractTwoBodyInteractionForce< DIM >
• AbstractWntOdeBasedCellCycleModel() : AbstractWntOdeBasedCellCycleModel
• AddBoundaryElement() : Node< SPACE_DIM >
• AddCell() : MeshBasedTissue< DIM > , MeshBasedTissueWithGhostNodes< DIM > , AbstractCellCentreBasedTissue< DIM > , AbstractTissue< DIM >
• AddCellKiller() : TissueSimulation< DIM >
• AddDirichletBoundaryCondition() : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• AddElement() : Node< SPACE_DIM >
• AddForceContribution() : AbstractForce< DIM > , GeneralisedLinearSpringForce< DIM > , LinearSpringWithVariableSpringConstantsForce< DIM >
• AddNeumannBoundaryCondition() : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• AddNode() : Cylindrical2dMesh , AbstractTissue< DIM > , NodeBasedTissue< DIM > , MeshBasedTissue< DIM >
• AddStimulus() : MultiStimulus
• AdjustStepSize() : RungeKuttaFehlbergIvpOdeSolver
• AfterSolve() : TissueSimulation< DIM > , CryptSimulation2d
• AmMaster() : PetscTools
• AnalyseMeshForBath() : BidomainProblem< DIM >
• AnalyticJacobian() : AbstractOdeSystemWithAnalyticJacobian , TysonNovak2001OdeSystem
• ApplyDirichletConditions() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• ApplyDirichletToLinearProblem() : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyDirichletToNonlinearJacobian() : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyDirichletToNonlinearResidual() : BoundaryConditionsContainer< ELEM_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyNeummanBoundaryConditions() : AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• ApplyTissueBoundaryConditions() : TissueSimulation< DIM > , CryptSimulation2d
• AssembleJacobian() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• AssembleJacobianNumerically() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• AssembleOnBoundaryElement() : NonlinearElasticityAssembler< DIM >
• AssembleOnElement() : ImplicitCardiacMechanicsAssembler< DIM > , AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , NonlinearElasticityAssembler< DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AssembleOnSurfaceElement() : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AssembleResidual() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• AssembleSystem() : NonlinearElasticityAssembler< DIM > , AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE > , AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >