- c -

• CalcActiveTensionResidual() : NhsSystemWithImplicitSolver
• Calculate() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CalculateActionPotentialDurations() : CellProperties
• CalculateCalciumTrop50() : NhsCellularMechanicsOdeSystem
• CalculateDividingCellCentreLocations() : CryptSimulation2d , TissueSimulation< DIM >
• CalculateFibreOrientations() : PapillaryFibreCalculator
• CalculateForceBetweenNodes() : AbstractTwoBodyInteractionForce< DIM > , GeneralisedLinearSpringForce< DIM > , MeshBasedTissueWithGhostNodes< DIM >
• CalculateNextYValue() : AbstractOneStepIvpOdeSolver , EulerIvpOdeSolver , RungeKutta2IvpOdeSolver , RungeKutta4IvpOdeSolver , RungeKuttaFehlbergIvpOdeSolver
• CalculateOnElement() : AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• CalculateProperties() : CellProperties
• CalculateRootFunction() : AbstractOdeSystem , IngeWntSwatCellCycleOdeSystem , TysonNovak2001OdeSystem , WntCellCycleOdeSystem
• CalculateStoppingEvent() : AbstractOdeSystem , IngeWntSwatCellCycleOdeSystem , TysonNovak2001OdeSystem , WntCellCycleOdeSystem
• CalculateT0() : NhsCellularMechanicsOdeSystem
• CalcZResidual() : NhsSystemWithImplicitSolver
• CancerParameters() : CancerParameters
• CardiacElectroMechanicsProblem() : CardiacElectroMechanicsProblem< DIM >
• CardiacElectroMechProbRegularGeom() : CardiacElectroMechProbRegularGeom< DIM >
• CartToEucliDistance() : DistanceMapCalculator< SPACE_DIM >
• CellIsInSection() : CryptStatistics
• CellIsInSectionPeriodic() : CryptStatistics
• CellProperties() : CellProperties
• CellsCanDifferentiate() : AbstractCellsGenerator< DIM > , FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM > , StochasticDurationGenerationBasedCellCycleModelCellsGenerator< DIM >
• CellwiseData() : CellwiseData< DIM >
• CellwiseOdeSystemInformation() : CellwiseOdeSystemInformation< ODE_SYSTEM >
• ChangeCellTypeDueToCurrentBetaCateninLevel() : AbstractWntOdeBasedCellCycleModel , IngeWntSwatCellCycleModel , WntCellCycleModel
• ChasteCuboid() : ChasteCuboid
• CheckForPetsc() : DistributedVector
• CheckTissueCellPointers() : MeshBasedTissue< DIM >
• CheckVectorSizes() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• Chunk() : DistributedVector::Chunk
• Clear() : NodeBasedTissue< DIM >
• Close() : LogFile
• CloseFilesAndPostProcess() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM >
• CloseOutputFiles() : AbstractTissue< DIM > , MeshBasedTissue< DIM >
• CommonConstructor() : Node< SPACE_DIM >
• CommonCopy() : TissueCell
• Compute() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractCardiacCell
• Compute1stPiolaKirchoffStress() : AbstractIncompressibleMaterialLaw< DIM >
• Compute2ndPiolaKirchoffStress() : AbstractIncompressibleMaterialLaw< DIM >
• ComputeBasisFunction() : LinearBasisFunction< 0 >
• ComputeBasisFunctions() : LinearBasisFunction< 0 >
• ComputeCauchyStress() : AbstractIncompressibleMaterialLaw< DIM >
• ComputeConstantInUSourceTerm() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeDiffusionTerm() : MonodomainPde< SPACE_DIM > , AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM > , AbstractLinearParabolicPde< SPACE_DIM >
• ComputeDistanceMap() : DistanceMapCalculator< SPACE_DIM >
• ComputeDuDtCoefficientFunction() : MonodomainPde< SPACE_DIM > , AbstractLinearParabolicPde< SPACE_DIM >
• ComputeExceptVoltage() : AbstractBackwardEulerCardiacCell< SIZE > , AbstractCardiacCell , FakeBathCell
• ComputeJacobian() : AbstractBackwardEulerCardiacCell< SIZE >
• ComputeLinearInUCoeffInSourceTerm() : AbstractLinearEllipticPde< ELEM_DIM, SPACE_DIM >
• ComputeLinearSourceTerm() : MonodomainPde< SPACE_DIM > , AbstractLinearParabolicPde< SPACE_DIM >
• ComputeMatrixTerm() : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainRhsMatrixAssembler< DIM > , BidomainWithBathRhsMatrixAssembler< DIM > , MonodomainRhsMatrixAssembler< DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM >
• ComputeMeshPartitioning() : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ComputeNonlinearSourceTerm() : MonodomainPde< SPACE_DIM > , AbstractLinearParabolicPde< SPACE_DIM >
• ComputeNorm() : CardiacNewtonSolver< SIZE >
• ComputeOneStepExceptVoltage() : AbstractBackwardEulerCardiacCell< SIZE > , BackwardEulerFoxModel2002Modified , BackwardEulerLuoRudyIModel1991
• ComputeResidual() : AbstractBackwardEulerCardiacCell< SIZE >
• ComputeStressAndStressDerivative() : AbstractIncompressibleMaterialLaw< DIM > , AbstractIsotropicIncompressibleMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM >
• ComputeVectorSurfaceTerm() : BidomainRhsMatrixAssembler< DIM > , BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainWithBathRhsMatrixAssembler< DIM > , MonodomainRhsMatrixAssembler< DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM >
• ComputeVectorTerm() : BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM > , BidomainRhsMatrixAssembler< DIM > , BidomainWithBathRhsMatrixAssembler< DIM > , MonodomainRhsMatrixAssembler< DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
• ConstBoundaryCondition() : ConstBoundaryCondition< SPACE_DIM >
• ConstructFromMeshReader() : ParallelTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
• ConstructStructureTensors() : PapillaryFibreCalculator
• ConstructVectorForMatrixBasedRhsAssembly() : BidomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM > , MonodomainMatrixBasedAssembler< ELEMENT_DIM, SPACE_DIM >
• Converge() : AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• ConvertOutputToMeshalyzerFormat() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM >
• ConvertTicksToMilliseconds() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• ConvertTicksToSeconds() : GenericEventHandler< NUM_EVENTS, CONCRETE >
• CorrectNonPeriodicMesh() : Cylindrical2dMesh
• CreateAssembler() : BidomainProblem< DIM > , MonodomainProblem< DIM > , AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM >
• CreateCardiacCellForNode() : AbstractCardiacCellFactory< SPACE_DIM >
• CreateCardiacCellForTissueNode() : QuarterStimulusCellFactory< CELL, DIM > , AbstractCardiacCellFactory< SPACE_DIM >
• CreateCardiacPde() : MonodomainProblem< DIM > , AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM >
• CreateCellCycleModel() : IngeWntSwatCellCycleModelCellsGenerator< DIM > , FixedDurationGenerationBasedCellCycleModelCellsGenerator< DIM > , StochasticWntCellCycleModelCellsGenerator< DIM > , WntCellCycleModelCellsGenerator< DIM > , AbstractCellsGenerator< DIM > , TysonNovakCellCycleModelCellsGenerator< DIM > , AbstractCellCycleModel , StochasticDurationGenerationBasedCellCycleModelCellsGenerator< DIM > , SimpleWntCellCycleModelCellsGenerator< DIM >
• CreateCellPair() : MeshBasedTissue< DIM >
• CreateConstantInitialGuess() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• CreateDaughterCellCycleModel() : WntCellCycleModel , SimpleWntCellCycleModel , TysonNovakCellCycleModel , IngeWntSwatCellCycleModel , StochasticWntCellCycleModel , FixedDurationGenerationBasedCellCycleModel , StochasticDurationGenerationBasedCellCycleModel , AbstractCellCycleModel
• CreateHaloNodes() : Cylindrical2dMesh
• CreateInitialCondition() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM > , BidomainProblem< DIM >
• CreateMirrorNodes() : Cylindrical2dMesh
• CreateOutputFiles() : MeshBasedTissue< DIM > , AbstractTissue< DIM >
• CreateVec() : DistributedVector , PetscTools
• CreateVoronoiTessellation() : MeshBasedTissue< DIM >
• CryptSimulation2d() : CryptSimulation2d
• CryptStatistics() : CryptStatistics
• Cylindrical2dMesh() : Cylindrical2dMesh