- s -

• Save() : TissueSimulationArchiver< DIM, SIM >
• ScaleMaterialParameters() : AbstractIncompressibleMaterialLaw< DIM > , PoleZeroMaterialLaw< DIM > , MooneyRivlinMaterialLaw< DIM >
• serialize() : AbstractCellCentreBasedTissue< DIM > , IngeWntSwatCellCycleModel , LinearSpringWithVariableSpringConstantsForce< DIM > , MeshBasedTissue< DIM > , SimpleWntCellCycleModel , MeshBasedTissueWithGhostNodes< DIM > , NodeBasedTissue< DIM > , AbstractTissue< DIM > , StochasticDurationGenerationBasedCellCycleModel , TissueSimulation< DIM > , StochasticWntCellCycleModel , CancerParameters , AbstractCellCycleModel , TysonNovakCellCycleModel , WntCellCycleModel , AbstractOdeBasedCellCycleModel , WntConcentration , TissueCell , SimulationTime , AbstractSimpleCellCycleModel , CellwiseData< DIM > , CryptSimulation2d , AbstractSimpleGenerationBasedCellCycleModel , AbstractCellKiller< SPACE_DIM > , RandomCellKiller< SPACE_DIM > , Cylindrical2dMesh , AbstractWntOdeBasedCellCycleModel , SloughingCellKiller , AbstractForce< DIM > , FixedDurationGenerationBasedCellCycleModel , AbstractTwoBodyInteractionForce< DIM > , GeneralisedLinearSpringForce< DIM >
• Set() : LogFile
• SetActiveTensionInitialGuess() : NhsSystemWithImplicitSolver
• SetAncestor() : TissueCell
• SetApoptosisTime() : CancerParameters
• SetApoptoticSpringCompressionStiffness() : CancerParameters
• SetApoptoticSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetApoptoticSpringTensionStiffness() : CancerParameters
• SetAreaBasedDampingConstant() : MeshBasedTissue< DIM >
• SetAreaBasedDampingConstantParameter() : CancerParameters
• SetAsProduct() : FourthOrderTensor2< DIM >
• SetBetaCateninSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetBetaCatSpringScaler() : CancerParameters
• SetBirthTime() : AbstractCellCycleModel , AbstractOdeBasedCellCycleModel , TissueCell
• SetBottomCellAncestors() : MeshBasedTissue< DIM >
• SetBoundaryConditionsContainer() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• SetCacheReplication() : AbstractCardiacPde< SPACE_DIM >
• SetCell() : AbstractCellCycleModel
• SetCellAncestorsToNodeIndices() : AbstractTissue< DIM >
• SetCellBoundaryAdhesionEnergyParameter() : CancerParameters
• SetCellCellAdhesionEnergyParameter() : CancerParameters
• SetCellCycleModel() : TissueCell
• SetCellType() : TissueCell
• SetConstantDataForTesting() : CellwiseData< DIM >
• SetConstantWntValueForTesting() : WntConcentration
• SetCriticalHypoxicDuration() : CancerParameters
• SetCryptLength() : CancerParameters
• SetCryptProjectionParameterA() : CancerParameters
• SetCryptProjectionParameterB() : CancerParameters
• SetCryptWidth() : CancerParameters
• SetDampingConstantMutant() : CancerParameters
• SetDampingConstantNormal() : CancerParameters
• SetDeformationEnergyParameter() : CancerParameters
• SetDivisionRestingSpringLength() : CancerParameters
• SetDivisionSeparation() : CancerParameters
• SetDt() : TissueSimulation< DIM >
• SetEdgeBasedSpringConstant() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetElectrodes() : BidomainProblem< DIM >
• SetEndTime() : TissueSimulation< DIM >
• SetEndTimeAndNumberOfTimeSteps() : SimulationTime
• SetFixedExtracellularPotentialNodes() : BidomainProblem< DIM > , BidomainDg0Assembler< ELEMENT_DIM, SPACE_DIM >
• SetFunctionalTractionBoundaryCondition() : NonlinearElasticityAssembler< DIM >
• SetG1Duration() : AbstractSimpleCellCycleModel , SimpleWntCellCycleModel , StochasticDurationGenerationBasedCellCycleModel
• SetG2Duration() : CancerParameters , StochasticWntCellCycleModel
• SetGeneration() : AbstractSimpleGenerationBasedCellCycleModel
• SetGhostNodes() : MeshBasedTissueWithGhostNodes< DIM >
• SetHepaOneCellG1Duration() : CancerParameters
• SetHepaOneCellHypoxicConcentration() : CancerParameters
• SetHepaOneCellQuiescentConcentration() : CancerParameters
• SetHepaOneParameters() : CancerParameters
• SetIndex() : Node< SPACE_DIM >
• SetInitialConditions() : AbstractOdeSystemInformation
• SetInitialConditionsComponent() : AbstractOdeSystemInformation
• SetIntracellularCalciumConcentration() : NhsCellularMechanicsOdeSystem
• SetIntracellularCalciumConcentrations() : ImplicitCardiacMechanicsAssembler< DIM >
• SetLambdaAndDerivative() : NhsCellularMechanicsOdeSystem
• SetLogged() : TissueCell
• SetMatrixIsConst() : AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > , AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• SetMatrixIsSymmetric() : LinearSystem
• SetMatureCellTargetArea() : CancerParameters
• SetMaxTransitGenerations() : CancerParameters
• SetMDuration() : CancerParameters
• SetMembraneSurfaceEnergyParameter() : CancerParameters
• SetMesh() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM > , AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• SetMinimumGapDuration() : CancerParameters
• SetMutantSprings() : LinearSpringWithVariableSpringConstantsForce< DIM >
• SetMutationState() : IngeWntSwatCellCycleOdeSystem , WntCellCycleOdeSystem , TissueCell
• SetNoBirth() : TissueSimulation< DIM >
• SetNode() : Cylindrical2dMesh , AbstractTissue< DIM > , MeshBasedTissue< DIM > , NodeBasedTissue< DIM >
• SetNodeForAverageOfPhiZeroed() : BidomainProblem< DIM >
• SetNodesPerProcessorFilename() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM >
• SetNoElectricsOutput() : CardiacElectroMechanicsProblem< DIM >
• SetNonlinearSolver() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• SetNumberOfQuadraturePointsPerDimension() : AbstractStaticAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE >
• SetNumNodesAndVars() : CellwiseData< DIM >
• SetOutputCellAncestors() : TissueSimulation< DIM >
• SetOutputCellCyclePhases() : TissueSimulation< DIM >
• SetOutputCellMutationStates() : TissueSimulation< DIM >
• SetOutputCellTypes() : TissueSimulation< DIM >
• SetOutputCellVariables() : TissueSimulation< DIM >
• SetOutputDirectory() : TissueSimulation< DIM >
• SetOutputNodes() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM >
• SetParameters() : PoleZeroMaterialLaw< DIM >
• SetPoint() : Node< SPACE_DIM >
• SetPrecision() : LogFile
• SetProblemSize() : DistributedVector
• SetProblemSizePerProcessor() : DistributedVector
• SetProteinConcentrationsForTestsOnly() : AbstractOdeBasedCellCycleModel
• SetSamplingTimestepMultiple() : TissueSimulation< DIM >
• SetScaleFactorGkr() : TenTusscher2006OdeSystem
• SetScaleFactorGks() : TenTusscher2006OdeSystem
• SetScaleFactorIto() : TenTusscher2006OdeSystem
• SetSDuration() : CancerParameters
• SetSlowValues() : AbstractCardiacCell
• SetSpringStiffness() : CancerParameters
• SetStartTime() : SimulationTime
• SetState() : AbstractCardiacCell
• SetStemCellG1Duration() : CancerParameters
• SetSurfaceTractionBoundaryConditions() : NonlinearElasticityAssembler< DIM >
• SetSymmetricDivisionProbability() : CancerParameters
• SetTissue() : WntConcentration , CellwiseData< DIM >
• SetTopOfLinearWntConcentration() : CancerParameters
• SetTransitCellG1Duration() : CancerParameters
• SetType() : WntConcentration
• setUp() : AbstractCancerTestSuite
• SetUpdateTissueRule() : TissueSimulation< DIM >
• SetupMat() : PetscTools
• SetupSolve() : TissueSimulation< DIM > , CryptSimulation2d
• setUpWorld() : PetscSetup
• SetupWriteBetaCatenin() : CryptSimulation2d
• SetUseAnalyticalJacobian() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE >
• SetValue() : CellwiseData< DIM >
• SetWatchedPosition() : CardiacElectroMechanicsProblem< DIM >
• SetWntChemotaxisStrength() : CancerParameters
• SetWntStemThreshold() : CancerParameters
• SetWntTransitThreshold() : CancerParameters
• SetWriteInfo() : AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM >
• SetWriteTissueAreas() : MeshBasedTissue< DIM >
• SetWriteVoronoiData() : MeshBasedTissue< DIM >
• SimpleDataWriter() : SimpleDataWriter
• SimpleNonlinearEllipticAssembler() : SimpleNonlinearEllipticAssembler< ELEMENT_DIM, SPACE_DIM >
• SimpleStimulus() : SimpleStimulus
• SimpleWntCellCycleModel() : SimpleWntCellCycleModel
• SimulationTime() : SimulationTime
• Size() : QuadraturePointsGroup< DIM >
• SloughingCellKiller() : SloughingCellKiller
• SmoothStructureTensors() : PapillaryFibreCalculator
• Solve() : CardiacNewtonSolver< SIZE > , RungeKuttaFehlbergIvpOdeSolver , AbstractCardiacProblem< SPACE_DIM, PROBLEM_DIM > , LinearSystem , AbstractOneStepIvpOdeSolver , ImplicitCardiacMechanicsAssembler< DIM > , TissueSimulation< DIM > , CardiacElectroMechanicsProblem< DIM > , AbstractOneStepIvpOdeSolver , AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE > , AbstractIvpOdeSolver , SimplePetscNonlinearSolver
• SolveCellSystems() : AbstractCardiacPde< SPACE_DIM >
• SolveDoNotUpdate() : NhsSystemWithImplicitSolver
• SolveLinearSystem() : CardiacNewtonSolver< SIZE >
• SolveOdeToTime() : TysonNovakCellCycleModel , WntCellCycleModel , IngeWntSwatCellCycleModel , AbstractOdeBasedCellCycleModel
• SpringIterator() : MeshBasedTissue< DIM >::SpringIterator
• SpringsBegin() : MeshBasedTissue< DIM >
• SpringsEnd() : MeshBasedTissue< DIM >
• StartApoptosis() : TissueCell
• StaticSolve() : AbstractNonlinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CONCRETE > , AbstractLinearAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, NON_HEART, CONCRETE > , AbstractAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• StimulusBoundaryCondition() : StimulusBoundaryCondition< SPACE_DIM >
• StochasticDurationGenerationBasedCellCycleModel() : StochasticDurationGenerationBasedCellCycleModel
• StochasticWntCellCycleModel() : StochasticWntCellCycleModel
• StoppingEventHasOccurred() : TissueSimulation< DIM >
• StoppingEventOccurred() : AbstractIvpOdeSolver
• Stripe() : DistributedVector::Stripe
• SwitchOff() : Electrodes< DIM >