Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
ExponentialG1GenerationalCellCycleModel.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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34*/
35
36#include "ExponentialG1GenerationalCellCycleModel.hpp"
37#include "Exception.hpp"
38#include "StemCellProliferativeType.hpp"
39#include "TransitCellProliferativeType.hpp"
40#include "DifferentiatedCellProliferativeType.hpp"
41
47
50 mRate(rModel.mRate)
51{
52 /*
53 * Initialize only the member variable defined in this class.
54 *
55 * The member variables mCurrentCellCyclePhase, mG1Duration,
56 * mMinimumGapDuration, mStemCellG1Duration, mTransitCellG1Duration,
57 * mSDuration, mG2Duration and mMDuration are initialized in the
58 * AbstractPhaseBasedCellCycleModel constructor.
59 *
60 * The member variables mBirthTime, mReadyToDivide and mDimension
61 * are initialized in the AbstractCellCycleModel constructor.
62 *
63 * Note that mG1Duration is (re)set as soon as InitialiseDaughterCell()
64 * is called on the new cell-cycle model.
65 */
66}
67
72
74{
76
77 if (mpCell->GetCellProliferativeType()->IsType<StemCellProliferativeType>()
78 || mpCell->GetCellProliferativeType()->IsType<TransitCellProliferativeType>() )
79 {
80 // Generate an exponential random number with mScale
82 }
83 else if (mpCell->GetCellProliferativeType()->IsType<DifferentiatedCellProliferativeType>())
84 {
85 mG1Duration = DBL_MAX;
86 }
87 else
88 {
90 }
91}
92
97
99{
100 mRate = rate;
101
102 // These are now set to the average value of the G1Duration
103 SetTransitCellG1Duration(1.0/rate);
104 SetStemCellG1Duration(1.0/rate);
105}
106
108{
109 assert(stemCellG1Duration > 0.0);
110 mStemCellG1Duration = stemCellG1Duration;
111
112 mRate = 1.0/stemCellG1Duration;
113}
114
116{
117 assert(transitCellG1Duration > 0.0);
118 mTransitCellG1Duration = transitCellG1Duration;
119
120 mRate = 1.0/transitCellG1Duration;
121}
122
124{
125 *rParamsFile << "\t\t\t<Rate>" << mRate << "</Rate>\n";
126
127 // Call method on direct parent class
129}
130
131// Serialization for Boost >= 1.36
#define NEVER_REACHED
#define CHASTE_CLASS_EXPORT(T)
virtual void OutputCellCycleModelParameters(out_stream &rParamsFile)
virtual void SetTransitCellG1Duration(double transitCellG1Duration)
static RandomNumberGenerator * Instance()
double ExponentialRandomDeviate(double scale)