Chaste Commit::baa90ac2819b962188b7562f2326be23c47859a7
StochasticOxygenBasedCellCycleModel.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
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15 this list of conditions and the following disclaimer.
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19 * Neither the name of the University of Oxford nor the names of its
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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33
34*/
35
36#include "StochasticOxygenBasedCellCycleModel.hpp"
37
42
45 mStochasticG2Duration(rModel.mStochasticG2Duration)
46{
47 /*
48 * Initialize only those member variables defined in this class.
49 *
50 * The member variables mCurrentHypoxicDuration, mCurrentHypoxiaOnsetTime,
51 * mHypoxicConcentration, mQuiescentConcentration and mCriticalHypoxicDuration
52 * are initialized in the SimpleOxygenBasedCellCycleModel constructor.
53 *
54 * The member variables mCurrentCellCyclePhase, mG1Duration,
55 * mMinimumGapDuration, mStemCellG1Duration, mTransitCellG1Duration,
56 * mSDuration, mG2Duration and mMDuration are initialized in the
57 * AbstractPhaseBasedCellCycleModel constructor.
58 *
59 * The member variables mBirthTime, mReadyToDivide and mDimension
60 * are initialized in the AbstractCellCycleModel constructor.
61 *
62 * Note that mG1Duration and mStochasticG2Duration are (re)set as
63 * soon as InitialiseDaughterCell() is called on the new cell-cycle model.
64 */
65}
66
68{
70
72 double standard_deviation = 1.0;
73
74 mStochasticG2Duration = p_gen->NormalRandomDeviate(mean, standard_deviation);
75
76 // Check that the normal random deviate has not returned a small or negative G2 duration
78 {
80 }
81}
82
88
94
100
105
110
112{
113 // No new parameters to output, so just call method on direct parent class
115}
116
117// Serialization for Boost >= 1.36
#define CHASTE_CLASS_EXPORT(T)
double NormalRandomDeviate(double mean, double stdDev)
static RandomNumberGenerator * Instance()
virtual void OutputCellCycleModelParameters(out_stream &rParamsFile)
virtual void OutputCellCycleModelParameters(out_stream &rParamsFile)