Chaste Commit::ca8ccdedf819b6e02855bc0e8e6f50bdecbc5208
AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM > Member List

This is the complete list of members for AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >, including all inherited members.

AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
AbstractCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
AbstractOffLatticeCellPopulation(AbstractMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, std::vector< CellPtr > &rCells, const std::vector< unsigned > locationIndices=std::vector< unsigned >())AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
AcceptCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter, CellPtr pCell)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AcceptCellWritersAcrossPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protectedvirtual
AcceptPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationCountWriter)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AcceptPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationEventWriter)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AcceptPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AddCell(CellPtr pNewCell, CellPtr pParentCell=CellPtr())=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AddCellPopulationCountWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellPopulationCountWriter(boost::shared_ptr< AbstractCellPopulationCountWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationCountWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellPopulationEventWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellPopulationEventWriter(boost::shared_ptr< AbstractCellPopulationEventWriter< ELEMENT_DIM, SPACE_DIM > > pCellPopulationEventWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
AddCellWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddCellWriter(boost::shared_ptr< AbstractCellWriter< ELEMENT_DIM, SPACE_DIM > > pCellWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddDivisionInformation(std::string divisionInformation)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
AddNode(Node< SPACE_DIM > *pNewNode)=0AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
AddPopulationWriter()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddPopulationWriter(boost::shared_ptr< AbstractCellPopulationWriter< ELEMENT_DIM, SPACE_DIM > > pPopulationWriter)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
AddRemovalInformation(std::string removalInformation)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
Begin()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
boost::serialization::accessAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >friend
CheckForStepSizeException(unsigned nodeIndex, c_vector< double, SPACE_DIM > &rDisplacement, double dt)=0AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
ClearDivisionsInformation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
ClearRemovalsInformation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
CloseRoundRobinWritersFiles()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >private
CloseWritersFiles()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
CreateOrderedPair(unsigned index1, unsigned index2)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
End()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GenerateRemovalInformation(CellPtr pCell, std::string killerInfo)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetAbsoluteMovementThreshold()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellAncestors()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellCyclePhaseCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellDataItemAtPdeNode(unsigned pdeNodeIndex, std::string &rVariableName, bool dirichletBoundaryConditionApplies=false, double dirichletBoundaryValue=0.0)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetCellMutationStateCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellProliferativeTypeCount()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellPropertyRegistry()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellsUsingLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetCellUsingLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetCentroidOfCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDampingConstant(unsigned nodeIndex)=0AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetDampingConstantMutant()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDampingConstantNormal()AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetDefaultTimeStep()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetDivisionsInformation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetIdentifier() constIdentifiable
GetLocationIndexUsingCell(CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetLocationOfCellCentre(CellPtr pCell)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetNeighbouringEdgeIndices(CellPtr pCell, unsigned pEdgeIndex)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
GetNeighbouringLocationIndices(CellPtr pCell)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetNeighbouringNodeIndices(unsigned index)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetNode(unsigned index)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetNumAllCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetNumNodes()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetNumRealCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetOutputResultsForChasteVisualizer()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetRemovalsInformation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetSizeOfCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
GetTetrahedralMeshForPdeModifier()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetVolumeOfCell(CellPtr pCell)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
GetWidth(const unsigned &rDimension)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
HasWriter() constAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >inline
InitialiseCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
IsCellAssociatedWithADeletedLocation(CellPtr pCell)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
IsCellAttachedToLocationIndex(unsigned index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsPdeNodeAssociatedWithNonApoptoticCell(unsigned pdeNodeIndex)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
IsRoomToDivide(CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
KillCell(CellPtr pCell, std::string killerInfo)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
mAbsoluteMovementThresholdAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellLocationMapAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellPopulationCountWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellPopulationEventWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellPopulationWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellsAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCellWritersAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mCentroidAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mDampingConstantMutantAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mDampingConstantNormalAbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mDivisionsInformationAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mLocationCellMapAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mOutputResultsForChasteVisualizerAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
MoveCellInLocationMap(CellPtr pCell, unsigned old_index, unsigned new_index)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
mpCellPropertyRegistryAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mpVtkMetaFileAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mRemovalsInformationAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
mrMeshAbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protected
OpenRoundRobinWritersFilesForAppend(OutputFileHandler &rOutputFileHandler)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >private
OpenWritersFiles(OutputFileHandler &rOutputFileHandler)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
OutputCellPopulationInfo(out_stream &rParamsFile)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
OutputCellPopulationParameters(out_stream &rParamsFile)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
RemoveCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
RemoveDeadCells()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
rGetCells()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
rGetMesh()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
serialize(Archive &archive, const unsigned int version)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >inlineprivate
SetAbsoluteMovementThreshold(double absoluteMovementThreshold)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetCellAncestorsToLocationIndices()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetCellUsingLocationIndex(unsigned index, CellPtr pCell)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDampingConstantMutant(double dampingConstantMutant)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDampingConstantNormal(double dampingConstantNormal)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDataOnAllCells(const std::string &rDataName, double dataValue)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetDefaultCellMutationStateAndProliferativeTypeOrdering()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SetNode(unsigned nodeIndex, ChastePoint< SPACE_DIM > &rNewLocation)=0AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
SetOutputResultsForChasteVisualizer(bool outputResultsForChasteVisualizer)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
SimulationSetupHook(AbstractCellBasedSimulation< ELEMENT_DIM, SPACE_DIM > *pSimulation)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
StartApoptosisOnCell(CellPtr pCell, std::string killerInfo)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >
TidyTemplatedExportIdentifier(std::string identifier) constIdentifiableprivate
Update(bool hasHadBirthsOrDeaths=true)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >pure virtual
UpdateCellProcessLocation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
UpdateNodeLocations(double dt)AbstractOffLatticeCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
Validate()=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protectedpure virtual
WriteDataToVisualizerSetupFile(out_stream &pVizSetupFile)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
WriteResultsToFiles(const std::string &rDirectory)AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
WriteVtkResultsToFile(const std::string &rDirectory)=0AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >protectedpure virtual
~AbstractCellPopulation()AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM >virtual
~Identifiable()Identifiablevirtual